Variant report

Variant	rs4895254
Chromosome Location	chr5:119803829-119803830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10050532	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2601209	0.83[CHD][hapmap];0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4895254	FAM170A	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119801600-119804000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:119801800-119809200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:119802400-119809600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:119802600-119804200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:119802600-119808000	Weak transcription	HSMMtube	muscle
6	chr5:119802600-119808000	Weak transcription	NH-A	brain
7	chr5:119802800-119804200	Enhancers	Osteobl	bone
8	chr5:119802800-119804400	Enhancers	NHDF-Ad	bronchial
9	chr5:119802800-119804800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:119802800-119807400	Weak transcription	NHLF	lung
11	chr5:119802800-119809600	Weak transcription	Aorta	Aorta
12	chr5:119803000-119804400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:119803000-119811800	Weak transcription	Fetal Heart	heart
14	chr5:119803400-119804000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr5:119803400-119804200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:119803400-119804800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr5:119803800-119804400	Active TSS	K562	blood
18	chr5:119803800-119807600	Weak transcription	HSMM	muscle
19	chr5:119803800-119809200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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