Variant report

Variant	rs4896679
Chromosome Location	chr6:144173352-144173353
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10457754	0.98[ASN][1000 genomes]
rs11155329	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12199553	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17073107	0.86[AFR][1000 genomes]
rs2092715	0.92[ASN][1000 genomes]
rs2277078	0.83[EUR][1000 genomes]
rs2328509	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9496784	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144165400-144178400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:144165600-144173600	Strong transcription	Placenta	Placenta
3	chr6:144165600-144175800	Weak transcription	Fetal Heart	heart
4	chr6:144165600-144175800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:144165600-144178400	Weak transcription	Stomach Mucosa	stomach
6	chr6:144165600-144186800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:144165800-144173600	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:144165800-144173600	Strong transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:144165800-144174200	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:144165800-144175400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:144166000-144173400	Strong transcription	H1 Cell Line	embryonic stem cell
12	chr6:144166000-144173400	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr6:144166000-144173600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
14	chr6:144166000-144173600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:144166000-144173600	Strong transcription	Primary hematopoietic stem cells	blood
16	chr6:144166000-144173600	Strong transcription	Muscle Satellite Cultured Cells	--
17	chr6:144166000-144173600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:144166000-144173600	Strong transcription	Fetal Intestine Large	intestine
19	chr6:144166000-144173800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:144166000-144174200	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr6:144166000-144174600	Strong transcription	Fetal Thymus	thymus
22	chr6:144166000-144175800	Strong transcription	Fetal Lung	lung
23	chr6:144166000-144176400	Strong transcription	Fetal Muscle Trunk	muscle
24	chr6:144166000-144180200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr6:144166000-144186000	Strong transcription	Primary B cells from peripheral blood	blood
26	chr6:144166000-144187000	Strong transcription	Duodenum Mucosa	Duodenum
27	chr6:144166000-144188600	Strong transcription	Primary T cells from cord blood	blood
28	chr6:144166200-144173400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:144166200-144173800	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr6:144166200-144174200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:144166400-144173600	Strong transcription	Brain Germinal Matrix	brain
32	chr6:144166400-144173800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr6:144166400-144174000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:144166400-144174200	Strong transcription	Liver	Liver
35	chr6:144166400-144175600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:144166400-144175600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:144166600-144173400	Strong transcription	Adipose Nuclei	Adipose
38	chr6:144166600-144173600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:144166600-144174600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr6:144166800-144173600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr6:144166800-144174000	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr6:144166800-144174200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:144167400-144173400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr6:144167400-144174400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr6:144168400-144173600	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr6:144170000-144177000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:144170000-144178000	Weak transcription	Colonic Mucosa	Colon
48	chr6:144170000-144178200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr6:144170000-144178400	Weak transcription	Fetal Brain Male	brain
50	chr6:144170200-144177400	Weak transcription	Aorta	Aorta

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