Variant report

Variant	rs4896705
Chromosome Location	chr6:144510421-144510422
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144502971..144505741-chr6:144509971..144512409,2	K562	blood:
2	chr6:144509051..144510978-chr6:144536060..144537778,2	MCF-7	breast:
3	chr6:144509634..144515392-chr6:144515473..144518844,5	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3734227	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067917	chr6:144498026-144517214	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144473400-144513800	Weak transcription	Primary T cells from cord blood	blood
2	chr6:144479000-144511800	Weak transcription	Psoas Muscle	Psoas
3	chr6:144499600-144511000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:144500800-144518800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr6:144501200-144520000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:144501400-144512400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:144501600-144519400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:144504000-144511800	Weak transcription	Right Atrium	heart
9	chr6:144505400-144512000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:144505600-144511400	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:144506200-144515600	Weak transcription	Fetal Heart	heart
12	chr6:144506600-144517000	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:144507000-144512200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr6:144507200-144511400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:144508200-144516200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:144508600-144510600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:144508600-144511800	Weak transcription	Aorta	Aorta
18	chr6:144508800-144510600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:144508800-144511800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:144508800-144511800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:144508800-144511800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:144508800-144511800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:144508800-144511800	Strong transcription	Lung	lung
24	chr6:144508800-144511800	Weak transcription	Pancreas	Pancrea
25	chr6:144508800-144511800	Weak transcription	NHLF	lung
26	chr6:144508800-144512000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:144508800-144512000	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr6:144508800-144520000	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr6:144509000-144510600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr6:144509000-144510600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr6:144509000-144510600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr6:144509000-144510800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr6:144509000-144511200	Weak transcription	HUVEC	blood vessel
34	chr6:144509000-144511400	Strong transcription	GM12878-XiMat	blood
35	chr6:144509000-144511800	Weak transcription	Esophagus	oesophagus
36	chr6:144509000-144511800	Weak transcription	Right Ventricle	heart
37	chr6:144509000-144512000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:144509000-144512000	Weak transcription	Left Ventricle	heart
39	chr6:144509000-144520000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr6:144509000-144520000	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr6:144509200-144511000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr6:144509200-144511000	Weak transcription	Liver	Liver
43	chr6:144509200-144511400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr6:144509200-144511600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:144509200-144517000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:144509200-144519200	Weak transcription	Spleen	Spleen
47	chr6:144509400-144520200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr6:144509600-144517000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:144509800-144511800	Weak transcription	Placenta	Placenta
50	chr6:144509800-144519400	Weak transcription	Primary T cells fromperipheralblood	blood

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