Variant report

Variant	rs4896771
Chromosome Location	chr6:145357269-145357270
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2068343	0.84[ASN][1000 genomes]
rs2876601	0.84[ASN][1000 genomes]
rs522959	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6570669	0.84[ASN][1000 genomes]
rs6924480	0.84[ASN][1000 genomes]
rs6929370	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6941009	0.80[AFR][1000 genomes]
rs7741672	0.84[ASN][1000 genomes]
rs7754511	0.84[ASN][1000 genomes]
rs9373443	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9376892	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9497171	0.84[ASN][1000 genomes]
rs9497177	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145356200-145357800	Weak transcription	NHLF	lung
2	chr6:145356600-145357600	Weak transcription	NH-A	brain
3	chr6:145357000-145357800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:145357200-145357800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:145357200-145357800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:145357200-145357800	Enhancers	Right Ventricle	heart
7	chr6:145357200-145357800	Enhancers	NHDF-Ad	bronchial
8	chr6:145357200-145358000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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