Variant report

Variant	rs4896773
Chromosome Location	chr6:145366983-145366984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13199258	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56196027	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7753282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390274	0.80[AMR][1000 genomes]
rs9399530	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145364400-145367400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:145364800-145368400	Enhancers	NHDF-Ad	bronchial
3	chr6:145365000-145367800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:145365600-145367000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:145365600-145367000	Enhancers	NH-A	brain
6	chr6:145365800-145367000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:145366000-145367000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:145366200-145368800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:145366200-145378400	Weak transcription	Psoas Muscle	Psoas
10	chr6:145366400-145368800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:145366400-145372600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:145366400-145374600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:145366600-145367000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr6:145366600-145368800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:145366800-145367000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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