Variant report

Variant	rs4897190
Chromosome Location	chr6:127128051-127128052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs1077890	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1105955	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1105956	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11154369	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11154374	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11154375	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11154376	0.81[ASN][1000 genomes]
rs11154377	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11154378	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11752270	0.86[ASN][1000 genomes]
rs11752287	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11754682	0.86[ASN][1000 genomes]
rs11755390	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11757951	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11759735	0.88[EUR][1000 genomes]
rs12173960	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12234117	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12234163	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12664316	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12664699	0.80[EUR][1000 genomes]
rs13190766	0.86[ASN][1000 genomes]
rs13196855	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13201060	0.87[ASN][1000 genomes]
rs13201789	0.90[ASN][1000 genomes]
rs13204751	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13207064	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13207638	0.85[ASN][1000 genomes]
rs13209747	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13213649	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13215166	0.87[ASN][1000 genomes]
rs13216524	0.90[ASN][1000 genomes]
rs1361831	0.82[ASN][1000 genomes]
rs1539554	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1539556	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1543705	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1543706	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1543707	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1592287	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1592288	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17570053	0.85[ASN][1000 genomes]
rs1832986	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1930942	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1930943	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1930944	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2021707	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2021708	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2022477	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2022478	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2022479	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2077111	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2143679	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2179723	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2225642	0.87[EUR][1000 genomes]
rs3195537	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34072374	0.82[ASN][1000 genomes]
rs34259221	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34443655	0.86[ASN][1000 genomes]
rs34656055	0.87[ASN][1000 genomes]
rs35108222	0.81[ASN][1000 genomes]
rs35111006	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35211576	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35697500	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35870379	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35900147	0.87[ASN][1000 genomes]
rs3926855	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4294027	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4424110	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4618551	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58274947	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59540076	0.86[ASN][1000 genomes]
rs62426305	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62426327	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62439171	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62439174	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62439175	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62439176	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6902861	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6908014	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6920370	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6921132	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6940295	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6940442	0.83[EUR][1000 genomes]
rs6941106	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs761356	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7739746	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7745882	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7746534	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7753502	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7758037	0.81[ASN][1000 genomes]
rs7766269	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9372844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9372845	0.90[ASN][1000 genomes]
rs9372849	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9372850	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9372851	0.89[EUR][1000 genomes]
rs9375454	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9375455	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9375456	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9375457	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375459	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9375460	0.88[ASN][1000 genomes]
rs9375472	0.87[ASN][1000 genomes]
rs9375474	0.86[ASN][1000 genomes]
rs9385405	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9385410	0.83[ASN][1000 genomes]
rs9388518	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9388519	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9388520	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9388521	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9388522	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9388523	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9388524	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9388525	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9388530	0.90[ASN][1000 genomes]
rs9388535	0.87[ASN][1000 genomes]
rs9388537	0.82[ASN][1000 genomes]
rs9398816	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9398817	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9398821	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9398822	0.86[ASN][1000 genomes]
rs9398823	0.83[ASN][1000 genomes]
rs9401908	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9401912	0.90[ASN][1000 genomes]
rs983668	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026498	chr6:126812609-127397240	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1024206	chr6:126873187-127475713	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538438	chr6:126873187-127475713	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1020322	chr6:127087551-127331285	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127125400-127128800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:127125400-127129400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:127125800-127128600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:127126000-127128800	Weak transcription	HUVEC	blood vessel
5	chr6:127126000-127132600	Weak transcription	A549	lung
6	chr6:127126000-127133800	Weak transcription	Fetal Kidney	kidney
7	chr6:127126400-127130000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:127127600-127132200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:127127600-127133200	Weak transcription	Fetal Lung	lung
10	chr6:127127800-127132200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:127127800-127132400	Weak transcription	Osteobl	bone
12	chr6:127128000-127128600	Weak transcription	NHDF-Ad	bronchial
13	chr6:127128000-127132200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:127128000-127132200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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