Variant report
| Variant | rs4897448 |
|---|---|
| Chromosome Location | chr6:130969945-130969946 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1532987 | 0.81[ASN][1000 genomes] |
| rs1566182 | 0.81[ASN][1000 genomes] |
| rs1587292 | 0.81[ASN][1000 genomes] |
| rs2173302 | 0.81[ASN][1000 genomes] |
| rs4632915 | 0.81[ASN][1000 genomes] |
| rs5027240 | 0.81[ASN][1000 genomes] |
| rs67307248 | 0.82[ASN][1000 genomes] |
| rs6901835 | 0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6909997 | 0.81[ASN][1000 genomes] |
| rs6933389 | 0.82[ASN][1000 genomes] |
| rs6933692 | 0.81[ASN][1000 genomes] |
| rs6936842 | 0.90[EUR][1000 genomes] |
| rs7741777 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7747285 | 0.81[ASN][1000 genomes] |
| rs7756492 | 0.82[ASN][1000 genomes] |
| rs7774595 | 0.82[ASN][1000 genomes] |
| rs9372974 | 0.82[ASN][1000 genomes] |
| rs9372975 | 0.82[ASN][1000 genomes] |
| rs9372976 | 0.81[ASN][1000 genomes] |
| rs9375758 | 0.81[ASN][1000 genomes] |
| rs9388825 | 0.81[ASN][1000 genomes] |
| rs9388828 | 0.81[ASN][1000 genomes] |
| rs9388829 | 0.81[ASN][1000 genomes] |
| rs9388830 | 0.81[ASN][1000 genomes] |
| rs9388831 | 0.81[ASN][1000 genomes] |
| rs9402260 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9402267 | 0.81[ASN][1000 genomes] |
| rs997732 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533971 | chr6:130490694-131172051 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv427767 | chr6:130875056-131008620 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv830806 | chr6:130938330-131107137 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:130968200-130979000 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 2 | chr6:130969400-130972800 | Weak transcription | Osteobl | bone |
