Variant report

Variant	rs4897501
Chromosome Location	chr6:131429132-131429133
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1919453	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050731	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895916	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901790	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6915845	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6921299	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6927445	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6929143	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483218	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9483219	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv830807	chr6:131390952-131581931	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1019112	chr6:131409284-131452300	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2761029	chr6:131413789-131452312	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1016925	chr6:131418532-131452300	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131426400-131433600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:131427400-131429400	Enhancers	Duodenum Mucosa	Duodenum
3	chr6:131427400-131429400	Enhancers	HUVEC	blood vessel
4	chr6:131427600-131430600	Enhancers	GM12878-XiMat	blood
5	chr6:131427800-131429400	Enhancers	A549	lung
6	chr6:131427800-131431200	Enhancers	Fetal Intestine Large	intestine
7	chr6:131428000-131429400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:131428200-131430400	Enhancers	HepG2	liver
9	chr6:131428400-131430400	Enhancers	Primary B cells from cord blood	blood
10	chr6:131428400-131430400	Weak transcription	Fetal Intestine Small	intestine
11	chr6:131428600-131429400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:131428600-131429400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:131428600-131433000	Weak transcription	HSMM	muscle
14	chr6:131428800-131430600	Enhancers	Primary B cells from peripheral blood	blood
15	chr6:131428800-131437200	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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