Variant report

Variant	rs4898864
Chromosome Location	chr14:55910285-55910286
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10134905	0.89[ASN][1000 genomes]
rs10137395	0.89[ASN][1000 genomes]
rs10144034	0.88[ASN][1000 genomes]
rs10146713	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10150596	0.88[ASN][1000 genomes]
rs11158040	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11627405	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11627790	0.91[ASN][1000 genomes]
rs11845228	0.89[ASN][1000 genomes]
rs12431542	0.89[ASN][1000 genomes]
rs12886860	0.84[ASN][1000 genomes]
rs12887653	0.89[ASN][1000 genomes]
rs12887846	0.89[ASN][1000 genomes]
rs12888181	0.89[ASN][1000 genomes]
rs12888191	0.90[ASN][1000 genomes]
rs12888234	0.88[ASN][1000 genomes]
rs12888361	0.89[ASN][1000 genomes]
rs1572613	0.89[ASN][1000 genomes]
rs2152975	0.89[ASN][1000 genomes]
rs2152976	0.89[ASN][1000 genomes]
rs2185036	0.90[ASN][1000 genomes]
rs28478984	0.89[ASN][1000 genomes]
rs4243600	0.89[ASN][1000 genomes]
rs4898865	0.89[ASN][1000 genomes]
rs4901563	0.89[ASN][1000 genomes]
rs4901564	0.89[ASN][1000 genomes]
rs4901565	0.89[ASN][1000 genomes]
rs4901566	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4901568	0.89[ASN][1000 genomes]
rs4901569	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4901570	0.88[ASN][1000 genomes]
rs61976569	0.85[ASN][1000 genomes]
rs61976570	0.92[ASN][1000 genomes]
rs61976571	0.89[ASN][1000 genomes]
rs6573028	0.89[ASN][1000 genomes]
rs6573030	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6573031	0.88[ASN][1000 genomes]
rs6573032	0.88[ASN][1000 genomes]
rs6573033	0.87[ASN][1000 genomes]
rs7142204	0.89[ASN][1000 genomes]
rs7143800	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7146080	0.96[ASN][1000 genomes]
rs7146170	0.88[ASN][1000 genomes]
rs7146269	0.92[ASN][1000 genomes]
rs7146306	0.91[ASN][1000 genomes]
rs7146472	0.87[ASN][1000 genomes]
rs7147968	0.88[ASN][1000 genomes]
rs7148481	0.89[ASN][1000 genomes]
rs7149622	0.89[ASN][1000 genomes]
rs8009706	0.88[ASN][1000 genomes]
rs8019270	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8020152	0.89[ASN][1000 genomes]
rs955256	0.87[ASN][1000 genomes]
rs955257	0.87[ASN][1000 genomes]
rs998871	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901958	chr14:55822095-56045411	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv901959	chr14:55853724-55916225	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	n/a
3	nsv901960	chr14:55853724-56085130	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv901961	chr14:55853724-56101879	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv901962	chr14:55862956-56101879	Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv901963	chr14:55871452-56085130	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv901964	chr14:55871452-56101879	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
8	nsv564874	chr14:55879685-56027815	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv1051564	chr14:55895610-56130788	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
10	nsv542103	chr14:55895610-56130788	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55906400-55913400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:55907200-55912800	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links