Variant report

Variant	rs4900356
Chromosome Location	chr14:97396439-97396440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11622737	0.87[AFR][1000 genomes]
rs28470957	1.00[EUR][1000 genomes]
rs4905545	1.00[EUR][1000 genomes]
rs61744725	1.00[EUR][1000 genomes]
rs74076806	1.00[EUR][1000 genomes]
rs74076810	1.00[EUR][1000 genomes]
rs74076811	1.00[EUR][1000 genomes]
rs746127	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs8016620	0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs856225	0.96[YRI][hapmap];0.94[AFR][1000 genomes]
rs856252	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97379400-97411800	Weak transcription	Primary T cells from cord blood	blood
2	chr14:97388400-97397400	Weak transcription	Dnd41	blood
3	chr14:97390800-97405800	Weak transcription	Spleen	Spleen
4	chr14:97392200-97397600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:97392200-97401000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:97392200-97402800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:97395800-97397200	Weak transcription	Fetal Brain Male	brain
8	chr14:97395800-97397600	Enhancers	Fetal Heart	heart
9	chr14:97396400-97396600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr14:97396400-97396600	ZNF genes & repeats	Gastric	stomach
11	chr14:97396400-97397600	Enhancers	Fetal Brain Female	brain
12	chr14:97396400-97397800	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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