Variant report

Variant	rs4900582
Chromosome Location	chr14:104058014-104058015
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34259310	0.85[ASN][1000 genomes]
rs8008382	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
2	nsv832883	chr14:103927687-104120953	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv902297	chr14:103956182-104061646	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv902298	chr14:103959289-104061646	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv902299	chr14:103967504-104061646	Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv902300	chr14:103967504-104205811	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
7	nsv902304	chr14:103979953-104061646	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
8	nsv902305	chr14:103979953-104073551	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
9	nsv566022	chr14:104007555-104092789	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4900582	BAG5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104030800-104073200	Weak transcription	Small Intestine	intestine
2	chr14:104035400-104060400	Weak transcription	Fetal Brain Male	brain
3	chr14:104041000-104059600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr14:104041000-104063200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:104041800-104059600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:104041800-104060600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr14:104043800-104058200	Strong transcription	Fetal Stomach	stomach
8	chr14:104043800-104059600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:104043800-104060200	Weak transcription	Stomach Mucosa	stomach
10	chr14:104045200-104059600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr14:104045600-104059400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr14:104045600-104060000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr14:104045600-104060000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr14:104045600-104060000	Weak transcription	Fetal Kidney	kidney
15	chr14:104045600-104060400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:104045600-104060600	Weak transcription	NHDF-Ad	bronchial
17	chr14:104045600-104067200	Weak transcription	Primary B cells from cord blood	blood
18	chr14:104045800-104059800	Weak transcription	HUVEC	blood vessel
19	chr14:104045800-104060400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr14:104045800-104064200	Weak transcription	Hela-S3	cervix
21	chr14:104046400-104059400	Weak transcription	GM12878-XiMat	blood
22	chr14:104048200-104059800	Weak transcription	NH-A	brain
23	chr14:104048400-104059600	Weak transcription	Right Ventricle	heart
24	chr14:104048400-104060000	Weak transcription	Brain Substantia Nigra	brain
25	chr14:104048400-104060600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr14:104049000-104060600	Weak transcription	Colonic Mucosa	Colon
27	chr14:104049000-104060600	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr14:104049600-104059400	Weak transcription	HMEC	breast
29	chr14:104049600-104059600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr14:104050200-104060000	Weak transcription	NHEK	skin
31	chr14:104050600-104060400	Weak transcription	HSMMtube	muscle
32	chr14:104051200-104060200	Weak transcription	HepG2	liver
33	chr14:104051200-104060400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr14:104053800-104058200	Strong transcription	Fetal Intestine Small	intestine
35	chr14:104054200-104058200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr14:104054200-104058200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr14:104054800-104058200	Strong transcription	Skeletal Muscle Male	skeletal muscle
38	chr14:104055000-104058200	Strong transcription	Colon Smooth Muscle	Colon
39	chr14:104055600-104059600	Weak transcription	Fetal Thymus	thymus
40	chr14:104055800-104058200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr14:104055800-104059600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr14:104055800-104060000	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr14:104055800-104060600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr14:104055800-104067000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr14:104055800-104073000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr14:104056200-104060200	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr14:104056800-104059600	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr14:104056800-104059600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr14:104056800-104061200	Weak transcription	Dnd41	blood
50	chr14:104056800-104064000	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links