Variant report

Variant	rs490061
Chromosome Location	chr1:166732301-166732302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12041892	0.85[CEU][hapmap];0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs2065801	0.91[CHB][hapmap]
rs4631663	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs563244	0.85[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap]
rs6427031	0.98[ASN][1000 genomes]
rs6658697	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs7549229	0.95[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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