Variant report

Variant	rs4900754
Chromosome Location	chr14:47872842-47872843
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10136895	0.98[ASN][1000 genomes]
rs10141027	0.99[ASN][1000 genomes]
rs10141600	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10143731	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10147494	0.96[ASN][1000 genomes]
rs10151311	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10467788	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11157555	0.98[ASN][1000 genomes]
rs11157557	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12147667	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12590461	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12883727	0.95[ASN][1000 genomes]
rs12894830	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17118508	0.97[ASN][1000 genomes]
rs17118530	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2416058	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28366604	0.88[ASN][1000 genomes]
rs35497858	0.80[ASN][1000 genomes]
rs4243546	0.99[ASN][1000 genomes]
rs57645873	0.96[ASN][1000 genomes]
rs61173432	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61663660	0.96[ASN][1000 genomes]
rs6572416	0.99[ASN][1000 genomes]
rs7142187	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7143762	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7146502	0.95[ASN][1000 genomes]
rs7147159	0.96[ASN][1000 genomes]
rs7149079	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7152403	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7159841	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7159880	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7160330	0.96[ASN][1000 genomes]
rs74047416	0.96[ASN][1000 genomes]
rs7493803	0.96[ASN][1000 genomes]
rs8009848	0.96[ASN][1000 genomes]
rs8015962	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8021251	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9323133	0.97[ASN][1000 genomes]
rs9652333	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048316	chr14:47297113-47885723	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv530661	chr14:47754197-47937396	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv498118	chr14:47754197-48274409	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1037655	chr14:47827437-47879207	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1053559	chr14:47827437-47880960	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:47871600-47873000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr14:47872200-47873000	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links