Variant report

Variant	rs4902306
Chromosome Location	chr14:65149199-65149200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65148900..65150464-chr14:65186037..65188877,2	MCF-7	breast:
2	chr14:65148833..65151255-chr14:65153026..65155458,2	K562	blood:
3	chr14:65143231..65150356-chr14:65170206..65174576,10	MCF-7	breast:
4	chr14:65135349..65138709-chr14:65145103..65149484,4	MCF-7	breast:
5	chr14:65145652..65150075-chr14:65165666..65170172,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126822	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10151495	0.85[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11158557	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159445	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs910365	0.82[EUR][1000 genomes]
rs9671808	0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4902306	FNTB	cis	lymphoblastoid	seeQTL

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65135400-65149200	Weak transcription	Aorta	Aorta
2	chr14:65142600-65154400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr14:65143400-65149200	Weak transcription	Spleen	Spleen
4	chr14:65145600-65149800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:65145600-65151400	Enhancers	HMEC	breast
6	chr14:65146200-65150200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:65146200-65153200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr14:65146400-65149200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:65146400-65150000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr14:65146400-65150400	Enhancers	Esophagus	oesophagus
11	chr14:65146400-65151000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:65146600-65149200	Enhancers	Fetal Intestine Small	intestine
13	chr14:65146600-65149400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr14:65146600-65150000	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr14:65146600-65150200	Enhancers	Rectal Smooth Muscle	rectum
16	chr14:65146600-65151400	Enhancers	Colon Smooth Muscle	Colon
17	chr14:65146600-65151600	Enhancers	Brain Angular Gyrus	brain
18	chr14:65146600-65153200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr14:65146800-65149400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr14:65146800-65149600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr14:65146800-65149600	Enhancers	Fetal Stomach	stomach
22	chr14:65146800-65149600	Enhancers	Fetal Thymus	thymus
23	chr14:65146800-65153000	Enhancers	Fetal Muscle Leg	muscle
24	chr14:65146800-65153000	Enhancers	Placenta	Placenta
25	chr14:65147000-65149200	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr14:65147000-65149200	Enhancers	Colonic Mucosa	Colon
27	chr14:65147000-65149600	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr14:65147000-65153000	Enhancers	Fetal Muscle Trunk	muscle
29	chr14:65147000-65155000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr14:65147200-65150200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr14:65147200-65150800	Weak transcription	HSMM	muscle
32	chr14:65147200-65151000	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr14:65147600-65151400	Enhancers	Ovary	ovary
34	chr14:65148000-65149400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr14:65148200-65149200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr14:65148200-65149400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr14:65148200-65151400	Enhancers	Pancreas	Pancrea
38	chr14:65148400-65149200	Weak transcription	Fetal Kidney	kidney
39	chr14:65148400-65149400	Enhancers	Adipose Nuclei	Adipose
40	chr14:65148400-65149400	Enhancers	Fetal Intestine Large	intestine
41	chr14:65148400-65149400	Enhancers	Gastric	stomach
42	chr14:65148400-65149400	Enhancers	A549	lung
43	chr14:65148400-65149600	Enhancers	Left Ventricle	heart
44	chr14:65148400-65151200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr14:65148600-65149400	Enhancers	Muscle Satellite Cultured Cells	--
46	chr14:65148600-65149400	Flanking Active TSS	Brain Anterior Caudate	brain
47	chr14:65148600-65149400	Enhancers	Brain Germinal Matrix	brain
48	chr14:65148600-65149400	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr14:65148600-65149600	Enhancers	Stomach Mucosa	stomach
50	chr14:65148600-65149600	Flanking Active TSS	Hela-S3	cervix

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