Variant report

Variant	rs4902606
Chromosome Location	chr14:69065366-69065367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69063634..69066048-chr14:69070455..69072811,2	K562	blood:
2	chr14:69065107..69068379-chr14:69069760..69071455,4	MCF-7	breast:
3	chr14:69058975..69063835-chr14:69063915..69067303,5	MCF-7	breast:
4	chr14:69059250..69061787-chr14:69065099..69067074,2	K562	blood:
5	chr14:69064012..69066620-chr14:69071141..69073837,2	MCF-7	breast:
6	chr14:69053718..69056599-chr14:69063479..69065769,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12878761	0.81[JPT][hapmap]
rs12879200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17829341	0.81[JPT][hapmap]
rs2145157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2331775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2331776	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4531674	0.86[JPT][hapmap]
rs4902608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6573844	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795754	chr14:69017623-69079110	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1832715	chr14:69017623-69079110	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69057000-69065800	Weak transcription	Gastric	stomach
2	chr14:69057600-69065800	Weak transcription	Left Ventricle	heart
3	chr14:69060200-69068200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr14:69061200-69065600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:69061200-69078000	Weak transcription	Fetal Heart	heart
6	chr14:69061400-69065600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:69061600-69065800	Weak transcription	Spleen	Spleen
8	chr14:69061800-69065400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr14:69061800-69066600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr14:69061800-69070400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr14:69062200-69065600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr14:69062200-69065800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr14:69062200-69073800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:69063600-69065400	Enhancers	HepG2	liver
15	chr14:69063600-69067200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr14:69063800-69065400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr14:69063800-69066000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:69063800-69067200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr14:69064000-69066800	Enhancers	HSMM	muscle
20	chr14:69064000-69067000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr14:69064200-69066400	Weak transcription	Psoas Muscle	Psoas
22	chr14:69064400-69065600	Enhancers	Fetal Intestine Small	intestine
23	chr14:69064400-69065600	Enhancers	HUVEC	blood vessel
24	chr14:69064400-69067200	Enhancers	Primary B cells from cord blood	blood
25	chr14:69064400-69067200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr14:69064400-69070800	Enhancers	Fetal Intestine Large	intestine
27	chr14:69064600-69065800	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr14:69064600-69065800	Enhancers	Stomach Mucosa	stomach
29	chr14:69064600-69066400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
30	chr14:69064800-69065600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr14:69064800-69065600	Enhancers	Rectal Smooth Muscle	rectum
32	chr14:69064800-69065600	Enhancers	NH-A	brain
33	chr14:69064800-69065600	Enhancers	NHLF	lung
34	chr14:69064800-69065800	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr14:69064800-69066200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr14:69064800-69066200	Enhancers	Brain Angular Gyrus	brain
37	chr14:69064800-69066400	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr14:69064800-69066600	Enhancers	Brain Hippocampus Middle	brain
39	chr14:69064800-69066800	Enhancers	Brain Substantia Nigra	brain
40	chr14:69064800-69066800	Enhancers	Colon Smooth Muscle	Colon
41	chr14:69064800-69067000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr14:69064800-69067000	Enhancers	Brain Cingulate Gyrus	brain
43	chr14:69064800-69067200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr14:69064800-69067200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr14:69064800-69067200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr14:69064800-69067200	Enhancers	Fetal Lung	lung
47	chr14:69064800-69067600	Enhancers	Fetal Kidney	kidney
48	chr14:69065000-69065400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr14:69065000-69065400	Flanking Active TSS	Duodenum Mucosa	Duodenum
50	chr14:69065000-69065400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links