Variant report

Variant	rs4902680
Chromosome Location	chr14:69420523-69420524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69402982..69422523-chr14:69436263..69448017,46	MCF-7	breast:
2	chr14:69419790..69422390-chr14:69443339..69445972,2	K562	blood:
3	chr14:69417161..69420849-chr14:69420995..69424800,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259062	Chromatin interaction
ENSG00000072110	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17106640	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs36048264	0.81[EUR][1000 genomes]
rs3784139	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv564964	chr14:69392264-69423164	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69394200-69422200	Weak transcription	Dnd41	blood
2	chr14:69399000-69423200	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr14:69402000-69426200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr14:69402200-69425200	Enhancers	Right Atrium	heart
5	chr14:69402400-69423600	Enhancers	Fetal Heart	heart
6	chr14:69402400-69427000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr14:69409800-69434400	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr14:69411200-69442600	Weak transcription	Fetal Brain Female	brain
9	chr14:69413400-69423800	Enhancers	HUVEC	blood vessel
10	chr14:69414800-69428800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr14:69415200-69423400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr14:69416400-69422200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr14:69416400-69423200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr14:69417400-69429200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:69417600-69420600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr14:69418000-69422000	Weak transcription	Thymus	Thymus
17	chr14:69418200-69424400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr14:69418400-69424600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr14:69418600-69424000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr14:69418800-69423400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:69418800-69424000	Weak transcription	Primary B cells from cord blood	blood
22	chr14:69419000-69421600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr14:69419000-69423400	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr14:69419200-69422200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr14:69419200-69423000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr14:69419400-69420600	Enhancers	Ovary	ovary
27	chr14:69419600-69420800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr14:69419600-69421800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr14:69419800-69421000	Weak transcription	Small Intestine	intestine
30	chr14:69419800-69421800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr14:69419800-69421800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr14:69419800-69421800	Enhancers	Fetal Stomach	stomach
33	chr14:69419800-69423600	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr14:69420000-69421400	Weak transcription	Stomach Mucosa	stomach
35	chr14:69420200-69420600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr14:69420200-69420600	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr14:69420200-69421400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr14:69420200-69421400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr14:69420200-69421400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr14:69420200-69421400	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr14:69420200-69421400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr14:69420200-69421600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr14:69420200-69421600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr14:69420200-69421600	Weak transcription	Liver	Liver
45	chr14:69420200-69421600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr14:69420200-69421600	Enhancers	Colon Smooth Muscle	Colon
47	chr14:69420200-69421600	Weak transcription	Psoas Muscle	Psoas
48	chr14:69420200-69421600	Weak transcription	Spleen	Spleen
49	chr14:69420200-69421800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr14:69420200-69421800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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