Variant report

Variant	rs4902985
Chromosome Location	chr14:72564001-72564002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17107204	0.93[EUR][1000 genomes]
rs17107252	1.00[EUR][1000 genomes]
rs17107255	1.00[EUR][1000 genomes]
rs17107306	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17107879	1.00[CEU][hapmap]
rs17179602	0.82[EUR][1000 genomes]
rs17768678	1.00[AFR][1000 genomes]
rs4899427	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72560600-72566600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72562200-72564800	Weak transcription	Brain Germinal Matrix	brain
3	chr14:72563200-72564200	Enhancers	Adipose Nuclei	Adipose
4	chr14:72563200-72567400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr14:72563400-72565200	Enhancers	Left Ventricle	heart
6	chr14:72563400-72565200	Enhancers	Right Atrium	heart
7	chr14:72563400-72565600	Enhancers	Right Ventricle	heart
8	chr14:72563600-72565200	Enhancers	Fetal Muscle Leg	muscle
9	chr14:72564000-72564600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr14:72564000-72565000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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