Variant report

Variant	rs4903582
Chromosome Location	chr14:77871777-77871778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000100580	Chromatin interaction
ENSG00000100583	Chromatin interaction
ENSG00000009830	Chromatin interaction
ENSG00000100577	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2287396	1.00[ASW][hapmap];1.00[LWK][hapmap]
rs8012228	1.00[ASW][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902107	chr14:77790416-77871777	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1362	chr14:77853202-77898605	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4903582	ANGEL1	cis	parietal	SCAN
rs4903582	YLPM1	cis	parietal	SCAN
rs4903582	AHSA1	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77859600-77886200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:77860000-77872400	Weak transcription	Brain Anterior Caudate	brain
3	chr14:77862600-77872600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr14:77867600-77875600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr14:77870200-77872200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr14:77870400-77872400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr14:77870400-77872400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:77870800-77872600	Enhancers	Primary hematopoietic stem cells	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links