Variant report

Variant	rs4903625
Chromosome Location	chr14:78130257-78130258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78129873..78132369-chr14:78135143..78137756,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10133987	0.91[ASN][1000 genomes]
rs10134175	0.83[AMR][1000 genomes]
rs10141070	0.81[EUR][1000 genomes]
rs11159286	1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs12882571	0.97[ASN][1000 genomes]
rs176942	1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs176945	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs176949	0.97[ASN][1000 genomes]
rs176958	0.81[ASN][1000 genomes]
rs176967	1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28481884	0.83[AMR][1000 genomes]
rs28640141	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs28648386	0.83[AMR][1000 genomes]
rs4622441	1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs6574389	0.97[ASN][1000 genomes]
rs7144053	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7145859	0.83[AMR][1000 genomes]
rs7148286	0.85[ASN][1000 genomes]
rs7150435	1.00[CEU][hapmap]
rs7151514	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8021036	1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053810	chr14:77987871-78148320	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2758362	chr14:78074180-78262572	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	esv2759998	chr14:78074180-78262572	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	esv2757575	chr14:78104897-78212462	Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	esv34940	chr14:78104897-78222798	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv521287	chr14:78108003-78211225	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv9155	chr14:78118162-78133830	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv869872	chr14:78119527-78161340	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78120600-78138200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr14:78121400-78139800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr14:78121800-78139800	Weak transcription	Gastric	stomach
4	chr14:78122000-78139600	Weak transcription	Fetal Intestine Large	intestine
5	chr14:78122000-78139800	Weak transcription	Pancreas	Pancrea
6	chr14:78123000-78137400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr14:78123400-78138800	Weak transcription	Liver	Liver
8	chr14:78123800-78136600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr14:78123800-78139000	Weak transcription	Left Ventricle	heart
10	chr14:78125400-78139800	Weak transcription	Right Ventricle	heart
11	chr14:78126600-78138000	Weak transcription	Primary B cells from cord blood	blood
12	chr14:78126800-78138800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr14:78126800-78139000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr14:78126800-78139800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:78126800-78139800	Weak transcription	Spleen	Spleen
16	chr14:78127000-78130400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr14:78127400-78138800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:78127400-78139800	Weak transcription	Lung	lung
19	chr14:78127400-78173200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr14:78127600-78137400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr14:78127600-78138600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr14:78127600-78138800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr14:78127600-78138800	Weak transcription	Brain Anterior Caudate	brain
24	chr14:78127600-78139000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr14:78127600-78139200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr14:78127600-78139200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr14:78127600-78139800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr14:78127600-78140000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr14:78127600-78140000	Weak transcription	Esophagus	oesophagus
30	chr14:78127800-78138000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr14:78127800-78138600	Weak transcription	Brain Hippocampus Middle	brain
32	chr14:78127800-78139600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr14:78127800-78139800	Weak transcription	Brain Germinal Matrix	brain
34	chr14:78128000-78132400	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr14:78128000-78138000	Weak transcription	Fetal Brain Female	brain
36	chr14:78128000-78138600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr14:78128000-78138800	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr14:78128000-78139000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr14:78128000-78157800	Weak transcription	Fetal Brain Male	brain
40	chr14:78128200-78139600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr14:78128600-78130600	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr14:78128800-78130600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr14:78128800-78138800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr14:78129000-78130400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr14:78129000-78130400	Enhancers	HMEC	breast
46	chr14:78129000-78138800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr14:78129000-78138800	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr14:78129000-78139800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr14:78129200-78130400	Enhancers	Hela-S3	cervix
50	chr14:78129200-78130400	Enhancers	NHEK	skin

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