Variant report

Variant	rs4906374
Chromosome Location	chr14:104270000-104270001
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:104268190..104272252-chr14:104312561..104316180,5	MCF-7	breast:
2	chr14:104268895..104271672-chr14:104378681..104380449,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258735	Chromatin interaction
ENSG00000088808	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1040813	0.83[ASN][1000 genomes]
rs10873539	0.80[ASN][1000 genomes]
rs11160765	0.83[ASN][1000 genomes]
rs1155751	0.94[ASN][1000 genomes]
rs11623546	0.85[ASN][1000 genomes]
rs11625740	0.83[ASN][1000 genomes]
rs1187416	0.83[ASN][1000 genomes]
rs12434686	0.83[ASN][1000 genomes]
rs12878678	0.83[ASN][1000 genomes]
rs12879501	0.86[ASN][1000 genomes]
rs12879612	0.84[ASN][1000 genomes]
rs12880167	0.83[ASN][1000 genomes]
rs12880233	0.84[ASN][1000 genomes]
rs12880368	0.91[ASN][1000 genomes]
rs12880413	0.85[ASN][1000 genomes]
rs12880821	0.94[ASN][1000 genomes]
rs12885018	0.86[ASN][1000 genomes]
rs12886840	0.82[ASN][1000 genomes]
rs12889993	0.86[ASN][1000 genomes]
rs12891175	0.86[ASN][1000 genomes]
rs12892186	0.87[ASN][1000 genomes]
rs12894254	0.84[ASN][1000 genomes]
rs12897150	0.83[ASN][1000 genomes]
rs1475007	0.83[ASN][1000 genomes]
rs2223937	0.85[ASN][1000 genomes]
rs2368560	0.95[ASN][1000 genomes]
rs28698555	0.83[ASN][1000 genomes]
rs2887282	0.85[ASN][1000 genomes]
rs34066659	0.83[ASN][1000 genomes]
rs34813623	0.83[ASN][1000 genomes]
rs3742369	0.85[ASN][1000 genomes]
rs4900594	0.87[ASN][1000 genomes]
rs4900595	0.83[ASN][1000 genomes]
rs4900598	0.84[ASN][1000 genomes]
rs4900600	0.85[ASN][1000 genomes]
rs4906365	0.80[ASN][1000 genomes]
rs4906372	0.85[ASN][1000 genomes]
rs4906373	0.84[ASN][1000 genomes]
rs55824307	0.86[ASN][1000 genomes]
rs7141473	0.80[ASN][1000 genomes]
rs7147171	0.83[ASN][1000 genomes]
rs7149024	0.84[ASN][1000 genomes]
rs7156697	0.83[ASN][1000 genomes]
rs7156834	0.83[ASN][1000 genomes]
rs7159810	0.85[ASN][1000 genomes]
rs7401843	0.87[ASN][1000 genomes]
rs7401901	0.81[ASN][1000 genomes]
rs8003653	0.83[ASN][1000 genomes]
rs8005225	0.83[ASN][1000 genomes]
rs8005594	0.85[ASN][1000 genomes]
rs8011109	0.85[ASN][1000 genomes]
rs8011137	0.80[ASN][1000 genomes]
rs8013637	0.94[ASN][1000 genomes]
rs8015603	0.85[ASN][1000 genomes]
rs8016014	0.85[ASN][1000 genomes]
rs8018062	0.85[ASN][1000 genomes]
rs8020234	0.94[ASN][1000 genomes]
rs8021682	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
2	nsv1045162	chr14:104140525-104594841	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542204	chr14:104140525-104594841	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	esv2758368	chr14:104147525-104412813	Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2760013	chr14:104147525-104412813	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv902313	chr14:104162263-104378087	Bivalent Enhancer Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
7	nsv902318	chr14:104255083-104464809	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
8	nsv902319	chr14:104255083-104620077	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	64 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104215400-104273200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr14:104218400-104277800	Weak transcription	Spleen	Spleen
3	chr14:104218800-104270200	Weak transcription	Ovary	ovary
4	chr14:104228800-104270200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr14:104230600-104271600	Weak transcription	Esophagus	oesophagus
6	chr14:104236800-104272800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr14:104238800-104270400	Weak transcription	HUVEC	blood vessel
8	chr14:104239000-104272400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr14:104241000-104274400	Weak transcription	Colon Smooth Muscle	Colon
10	chr14:104245200-104271400	Weak transcription	Right Ventricle	heart
11	chr14:104257600-104272000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr14:104257800-104284000	Weak transcription	Gastric	stomach
13	chr14:104258800-104274800	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr14:104262600-104277200	Weak transcription	Pancreas	Pancrea
15	chr14:104263000-104277400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr14:104263200-104281800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr14:104263600-104274600	Weak transcription	Liver	Liver
18	chr14:104263800-104275800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr14:104267200-104271000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr14:104267600-104271000	Enhancers	HMEC	breast
21	chr14:104268000-104271200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr14:104268200-104270200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr14:104268400-104270200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr14:104268600-104270000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr14:104268600-104270000	Weak transcription	Osteobl	bone
26	chr14:104268600-104270200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr14:104268600-104285600	Weak transcription	Lung	lung
28	chr14:104269000-104270200	Weak transcription	Brain Angular Gyrus	brain
29	chr14:104269000-104270800	Weak transcription	Left Ventricle	heart
30	chr14:104269200-104270200	Weak transcription	Fetal Heart	heart
31	chr14:104269200-104271400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr14:104269200-104272000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr14:104269400-104270000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr14:104269400-104270000	Enhancers	NHEK	skin
35	chr14:104269600-104270000	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr14:104270000-104270600	Flanking Active TSS	NHEK	skin
37	chr14:104270000-104270800	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr14:104270000-104270800	Enhancers	Osteobl	bone
39	chr14:104270000-104271000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links