Variant report

Variant	rs4907025
Chromosome Location	chr1:85608721-85608722
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1674162	0.85[EUR][1000 genomes]
rs1674175	0.91[EUR][1000 genomes]
rs817389	0.91[EUR][1000 genomes]
rs817390	0.91[EUR][1000 genomes]
rs817391	0.91[EUR][1000 genomes]
rs817392	0.91[EUR][1000 genomes]
rs817393	0.91[EUR][1000 genomes]
rs817394	0.91[EUR][1000 genomes]
rs817398	0.91[EUR][1000 genomes]
rs817399	0.91[EUR][1000 genomes]
rs817401	0.91[EUR][1000 genomes]
rs817403	0.89[EUR][1000 genomes]
rs817404	0.85[EUR][1000 genomes]
rs817411	0.91[EUR][1000 genomes]
rs817415	0.91[EUR][1000 genomes]
rs817422	0.91[EUR][1000 genomes]
rs817423	0.91[EUR][1000 genomes]
rs817425	0.91[EUR][1000 genomes]
rs817428	0.91[EUR][1000 genomes]
rs817434	0.91[EUR][1000 genomes]
rs817436	0.91[EUR][1000 genomes]
rs817438	0.91[EUR][1000 genomes]
rs817445	0.91[EUR][1000 genomes]
rs817446	0.87[EUR][1000 genomes]
rs817447	0.91[EUR][1000 genomes]
rs817451	0.91[EUR][1000 genomes]
rs817453	0.91[EUR][1000 genomes]
rs817456	0.85[EUR][1000 genomes]
rs860140	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv34165	chr1:85542040-85846249	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv830459	chr1:85589585-85786311	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85594800-85614400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:85603800-85609400	Weak transcription	Fetal Intestine Small	intestine
3	chr1:85603800-85614200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:85603800-85615600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:85603800-85618800	Weak transcription	Gastric	stomach
6	chr1:85603800-85632200	Weak transcription	Fetal Lung	lung
7	chr1:85604800-85611800	Weak transcription	Placenta	Placenta
8	chr1:85606800-85609400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:85608400-85608800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:85608400-85608800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:85608400-85608800	Enhancers	Pancreas	Pancrea
12	chr1:85608600-85608800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr1:85608600-85609200	Enhancers	Left Ventricle	heart
14	chr1:85608600-85614200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:85608600-85655200	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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