Variant report

Variant	rs4909918
Chromosome Location	chr11:10023292-10023293
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10770080	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10770085	0.88[AMR][1000 genomes]
rs10840339	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10840342	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11042581	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11042582	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11042598	0.85[AMR][1000 genomes]
rs12295754	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2403259	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2403268	0.81[ASN][1000 genomes]
rs4309158	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6483883	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7120865	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7128698	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7129239	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7947588	0.86[AMR][1000 genomes]
rs7950140	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv553475	chr11:10019879-10059623	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
2	chr11:9985800-10023600	Weak transcription	Primary B cells from cord blood	blood
3	chr11:9985800-10049000	Weak transcription	Left Ventricle	heart
4	chr11:9990400-10028200	Weak transcription	Fetal Brain Female	brain
5	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:9994800-10041800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:9996000-10024600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:9999800-10024000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr11:9999800-10024200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:10001400-10066200	Weak transcription	Pancreas	Pancrea
11	chr11:10004200-10048600	Weak transcription	Brain Angular Gyrus	brain
12	chr11:10004400-10024200	Weak transcription	NHLF	lung
13	chr11:10004600-10024000	Weak transcription	Brain Anterior Caudate	brain
14	chr11:10004600-10027600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr11:10004800-10023800	Weak transcription	HUVEC	blood vessel
16	chr11:10004800-10023800	Weak transcription	Osteobl	bone
17	chr11:10004800-10024800	Weak transcription	HSMM	muscle
18	chr11:10005000-10024000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:10005200-10024000	Weak transcription	Hela-S3	cervix
20	chr11:10005200-10026400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:10005200-10027600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:10005400-10024400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:10005400-10026400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:10005400-10026400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:10005400-10027200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:10005400-10027400	Weak transcription	Fetal Stomach	stomach
27	chr11:10005400-10027600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:10005400-10029000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:10005600-10024000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr11:10005600-10026400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr11:10005800-10024200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr11:10006800-10026200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr11:10007200-10027200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:10007600-10041800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr11:10009400-10024200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:10010600-10026400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:10010600-10030000	Weak transcription	Primary T cells from cord blood	blood
38	chr11:10010600-10051200	Weak transcription	Ovary	ovary
39	chr11:10011200-10027200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:10011600-10024600	Weak transcription	HepG2	liver
41	chr11:10011600-10027200	Weak transcription	Fetal Muscle Leg	muscle
42	chr11:10011600-10028000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr11:10012000-10024800	Weak transcription	Fetal Intestine Large	intestine
44	chr11:10012000-10026200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:10012600-10049000	Weak transcription	Fetal Kidney	kidney
46	chr11:10013400-10026600	Weak transcription	A549	lung
47	chr11:10017600-10026400	Weak transcription	NHEK	skin
48	chr11:10017600-10027200	Weak transcription	Fetal Intestine Small	intestine
49	chr11:10018000-10031400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:10020400-10026200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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