Variant report

Variant	rs4909929
Chromosome Location	chr11:10471199-10471200
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:10471149-10471199	MCF-7	breast:	n/a
2	chr11:10471149-10471199	HEEpiC	esophagus:	n/a
3	chr11:10471149-10471199	AG09319	gingival:	n/a
4	chr11:10471149-10471199	GM12892	blood:	n/a
5	chr11:10471149-10471199	NT2-D1	testis:	n/a
6	chr11:10471149-10471199	Jurkat	blood:	n/a
7	chr11:10471149-10471199	K562	blood:	n/a
8	chr11:10471149-10471199	CMK	blood:	n/a
9	chr11:10471149-10471199	AG04450	lung:	fetal
10	chr11:10471149-10471199	AoSMC	blood vessel:	n/a
11	chr11:10471149-10471199	HRE	kidney:	n/a
12	chr11:10471149-10471199	HIPEpiC	eye:	n/a
13	chr11:10471149-10471199	RPTEC	kidney:	n/a
14	chr11:10471149-10471199	NB4	blood:	n/a
15	chr11:10471149-10471199	HRCEpiC	kidney:	n/a
16	chr11:10471149-10471199	LNCaP	prostate:	n/a
17	chr11:10471149-10471199	ovcar-3	ovarian:	n/a
18	chr11:10471149-10471199	HCT-116	colon:	n/a
19	chr11:10471149-10471199	BE2_C	brain:	n/a
20	chr11:10471149-10471199	HepG2	liver:	n/a
21	chr11:10471149-10471199	NHDF-neo	bronchial:	n/a
22	chr11:10471149-10471199	T-47D	breast:	n/a
23	chr11:10471149-10471199	HPAEpiC	pulmonary alveolar:	n/a
24	chr11:10471149-10471199	Hela-S3	cervix:	n/a
25	chr11:10471149-10471199	GM19239	blood:	n/a
26	chr11:10471149-10471199	SK-N-SH_RA	brain:	n/a
27	chr11:10471149-10471199	HCF	heart:	n/a
28	chr11:10471149-10471199	IMR90	lung:	fetal
29	chr11:10471149-10471199	NHBE	bronchial:	n/a
30	chr11:10471149-10471199	A549	lung:	n/a
31	chr11:10471149-10471199	GM12878	blood:	n/a
32	chr11:10471149-10471199	H1-hESC	embryonic stem cell:	embryo
33	chr11:10471149-10471199	ECC-1	luminal epithelium:	n/a
34	chr11:10471149-10471199	PFSK-1	brain:	n/a
35	chr11:10471149-10471199	HL-60	blood:	n/a
36	chr11:10471149-10471199	AG04449	skin:	fetal
37	chr11:10471149-10471199	GM06990	blood:	n/a
38	chr11:10471149-10471199	SAEC	small airway:	n/a
39	chr11:10471149-10471199	AG09309	skin:	n/a
40	chr11:10471149-10471199	HCM	heart:	n/a
41	chr11:10471149-10471199	MCF10A-Er-Src	breast:	n/a
42	chr11:10471149-10471199	U87	brain:	n/a
43	chr11:10471149-10471199	HAEpiC	amniotic membrane:	n/a
44	chr11:10471149-10471199	SKMC	muscle:	n/a
45	chr11:10471149-10471199	GM12891	blood:	n/a
46	chr11:10471149-10471199	HMEC	breast:	n/a
47	chr11:10471149-10471199	SK-N-MC	brain:	n/a
48	chr11:10471149-10471199	Caco-2	colon:	n/a
49	chr11:10471149-10471199	NH-A	brain:	n/a
50	chr11:10471149-10471199	HUVEC	blood vessel:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:10470733..10474944-chr11:10476648..10480616,5	MCF-7	breast:
2	chr11:10471184..10472852-chr11:10561290..10564176,2	K562	blood:
3	chr11:10469398..10472547-chr11:10473380..10477623,4	K562	blood:

No data

Variant related genes	Relation type
AMPD3	CpG island
ENSG00000110315	Chromatin interaction
ENSG00000133805	Chromatin interaction
ENSG00000177112	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10840415	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10840416	0.94[ASN][1000 genomes]
rs10840417	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11042805	0.85[EUR][1000 genomes]
rs12184411	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4909928	0.97[ASN][1000 genomes]
rs4910140	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7107698	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7109334	0.81[AMR][1000 genomes]
rs7123980	0.80[AMR][1000 genomes]
rs7124144	0.81[AMR][1000 genomes]
rs72856182	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7937289	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv896990	chr11:10458596-10514707	Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10457600-10471800	Weak transcription	NHDF-Ad	bronchial
2	chr11:10464600-10471600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:10465600-10472000	Weak transcription	Right Atrium	heart
4	chr11:10466600-10471400	Weak transcription	Spleen	Spleen
5	chr11:10466800-10471200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr11:10467000-10471200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:10467000-10471200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:10467200-10471200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr11:10467200-10471800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:10467400-10471200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr11:10467400-10471400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr11:10467400-10471600	Weak transcription	Adipose Nuclei	Adipose
13	chr11:10467600-10471200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr11:10467600-10471200	Weak transcription	Fetal Thymus	thymus
15	chr11:10469200-10471200	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr11:10469800-10471200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr11:10469800-10471400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr11:10470000-10471200	Weak transcription	Pancreas	Pancrea
19	chr11:10471000-10471200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr11:10471000-10471200	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr11:10471000-10471200	Enhancers	Brain Anterior Caudate	brain
22	chr11:10471000-10471200	Enhancers	Psoas Muscle	Psoas
23	chr11:10471000-10471400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr11:10471000-10471400	Enhancers	Brain Hippocampus Middle	brain
25	chr11:10471000-10471600	Enhancers	Primary B cells from cord blood	blood
26	chr11:10471000-10471600	Enhancers	Primary B cells from peripheral blood	blood
27	chr11:10471000-10471600	Enhancers	Primary T cells from cord blood	blood
28	chr11:10471000-10471600	Enhancers	Primary T cells fromperipheralblood	blood
29	chr11:10471000-10471600	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr11:10471000-10471600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr11:10471000-10471600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:10471000-10471600	Enhancers	Esophagus	oesophagus
33	chr11:10471000-10471800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr11:10471000-10471800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr11:10471000-10472000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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