Variant report

Variant	rs491195
Chromosome Location	chr18:10111801-10111802
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16973833	1.00[AMR][1000 genomes]
rs29166	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518334	chr18:9994685-10132916	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1058492	chr18:9995045-10115533	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1064540	chr18:9995045-10133804	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1058660	chr18:10006788-10130661	Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:10103000-10114600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:10110400-10117200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr18:10111000-10113400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr18:10111000-10115400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr18:10111200-10114000	Enhancers	Primary B cells from cord blood	blood
6	chr18:10111200-10114000	Enhancers	Ovary	ovary
7	chr18:10111400-10115400	Enhancers	Fetal Lung	lung
8	chr18:10111600-10112000	Weak transcription	Esophagus	oesophagus
9	chr18:10111600-10112200	Enhancers	Primary B cells from peripheral blood	blood
10	chr18:10111600-10112200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr18:10111600-10113000	Enhancers	NHDF-Ad	bronchial
12	chr18:10111600-10113800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr18:10111600-10117200	Enhancers	Adipose Nuclei	Adipose
14	chr18:10111800-10112200	Enhancers	Pancreas	Pancrea
15	chr18:10111800-10113800	Enhancers	Placenta	Placenta
16	chr18:10111800-10115200	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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