Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10789044	0.84[AMR][1000 genomes]
rs10789045	0.84[AMR][1000 genomes]
rs10889026	0.84[AMR][1000 genomes]
rs10889030	0.84[EUR][1000 genomes]
rs12034636	0.84[AMR][1000 genomes]
rs12120310	0.84[AMR][1000 genomes]
rs12123599	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1413226	0.82[AMR][1000 genomes]
rs1504588	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1504589	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs155287	0.84[EUR][1000 genomes]
rs155288	0.84[EUR][1000 genomes]
rs17482565	0.88[AMR][1000 genomes]
rs17541356	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17541479	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1831870	0.83[EUR][1000 genomes]
rs4912429	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4912431	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4912432	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55944821	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6670988	0.88[AMR][1000 genomes]
rs6680219	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7548633	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7552759	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57644800-57646000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:57644800-57646800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr1:57645600-57646000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:57645600-57646000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:57645600-57646000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr1:57645600-57646800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:57645800-57646000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr1:57645800-57646600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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