Variant report

Variant	rs4913526
Chromosome Location	chr12:67501987-67501988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:70056279..70056815-chr12:67501480..67502188,2	MCF-7	breast:
2	chr12:67500446..67502740-chr12:67502846..67505140,2	K562	blood:
3	chr12:67462252..67464052-chr12:67500249..67504193,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000256248	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10784607	0.85[AMR][1000 genomes]
rs10784608	0.85[AMR][1000 genomes]
rs10878560	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs10878566	1.00[CEU][hapmap];0.81[GIH][hapmap]
rs11829047	0.85[AMR][1000 genomes]
rs12230670	0.85[AMR][1000 genomes]
rs12315969	1.00[EUR][1000 genomes]
rs12367764	0.85[EUR][1000 genomes]
rs12372307	1.00[CEU][hapmap];0.84[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1465024	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1465025	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1526841	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1581599	0.92[EUR][1000 genomes]
rs1918141	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2177937	1.00[EUR][1000 genomes]
rs4913527	0.92[EUR][1000 genomes]
rs4913529	1.00[CEU][hapmap]
rs61917788	0.85[EUR][1000 genomes]
rs61917789	0.85[EUR][1000 genomes]
rs61917790	0.85[EUR][1000 genomes]
rs61917791	0.85[EUR][1000 genomes]
rs61917792	0.85[EUR][1000 genomes]
rs61917793	0.85[EUR][1000 genomes]
rs61917794	0.85[EUR][1000 genomes]
rs61917795	0.85[EUR][1000 genomes]
rs61917796	0.85[EUR][1000 genomes]
rs61917797	0.85[EUR][1000 genomes]
rs61917798	0.85[EUR][1000 genomes]
rs61917799	0.85[EUR][1000 genomes]
rs61917800	0.85[EUR][1000 genomes]
rs61917801	0.85[EUR][1000 genomes]
rs61917802	0.85[EUR][1000 genomes]
rs61917803	0.85[EUR][1000 genomes]
rs61917804	0.85[EUR][1000 genomes]
rs61917826	0.92[EUR][1000 genomes]
rs61917835	0.85[EUR][1000 genomes]
rs6581741	1.00[EUR][1000 genomes]
rs6581742	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6581743	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6581745	0.93[EUR][1000 genomes]
rs7300759	1.00[CEU][hapmap]
rs7305006	1.00[EUR][1000 genomes]
rs7965693	1.00[EUR][1000 genomes]
rs7966396	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7980881	0.86[EUR][1000 genomes]
rs941097	1.00[EUR][1000 genomes]
rs941098	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541524	chr12:67311057-67700349	Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv899217	chr12:67472631-67501987	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67501800-67502000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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