Variant report

Variant	rs4916713
Chromosome Location	chr5:90648108-90648109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10942629	0.82[EUR][1000 genomes]
rs11950828	0.81[EUR][1000 genomes]
rs2063461	0.88[EUR][1000 genomes]
rs4916860	0.87[EUR][1000 genomes]
rs57318317	0.83[EUR][1000 genomes]
rs60716916	0.87[EUR][1000 genomes]
rs62373948	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62373959	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6873839	0.80[EUR][1000 genomes]
rs6886011	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90646400-90663800	Weak transcription	Thymus	Thymus
2	chr5:90647400-90649800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr5:90647600-90650400	Weak transcription	Fetal Thymus	thymus
4	chr5:90647800-90653000	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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