Variant report

Variant	rs4919094
Chromosome Location	chr10:99090713-99090714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:99090706-99090781	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99089670..99092667-chr10:99113757..99116464,3	MCF-7	breast:
2	chr10:99050239..99051953-chr10:99089208..99091250,2	K562	blood:

Variant related genes	Relation type
ENSG00000225850	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10882905	0.86[EUR][1000 genomes]
rs11189150	0.88[EUR][1000 genomes]
rs1334891	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3740514	0.93[EUR][1000 genomes]
rs4919096	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045553	chr10:98944397-99122203	Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv540750	chr10:98944397-99122203	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv831952	chr10:98998344-99145924	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv895914	chr10:99006083-99131676	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv825533	chr10:99070570-99115599	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv825534	chr10:99081505-99115599	Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99080600-99091200	Weak transcription	HMEC	breast
2	chr10:99081200-99091200	Weak transcription	Psoas Muscle	Psoas
3	chr10:99081200-99092600	Weak transcription	Aorta	Aorta
4	chr10:99081600-99091000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:99081600-99091600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:99081600-99091600	Weak transcription	Fetal Kidney	kidney
7	chr10:99081600-99091600	Weak transcription	HSMMtube	muscle
8	chr10:99081800-99091000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:99081800-99091000	Weak transcription	HUVEC	blood vessel
10	chr10:99081800-99091200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:99081800-99091200	Weak transcription	Small Intestine	intestine
12	chr10:99081800-99091200	Weak transcription	HSMM	muscle
13	chr10:99081800-99091800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:99081800-99092000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr10:99081800-99092600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:99082000-99091000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr10:99082000-99091000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:99082000-99091200	Weak transcription	Placenta	Placenta
19	chr10:99082200-99091200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:99082200-99091600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:99082400-99090800	Weak transcription	Fetal Brain Male	brain
22	chr10:99082400-99091200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:99083200-99091000	Weak transcription	Brain Substantia Nigra	brain
24	chr10:99084200-99091000	Enhancers	Stomach Mucosa	stomach
25	chr10:99084200-99091600	Weak transcription	Osteobl	bone
26	chr10:99085200-99091800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:99085600-99091200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr10:99085800-99091200	Weak transcription	Fetal Brain Female	brain
29	chr10:99086800-99091200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:99086800-99091600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:99086800-99091800	Enhancers	Pancreas	Pancrea
32	chr10:99086800-99093200	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
33	chr10:99087200-99091200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:99087600-99091000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr10:99087600-99091800	Enhancers	Right Ventricle	heart
36	chr10:99088000-99091000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr10:99088000-99091800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr10:99088400-99091000	Weak transcription	Colonic Mucosa	Colon
39	chr10:99088400-99091000	Genic enhancers	Fetal Intestine Small	intestine
40	chr10:99088400-99091400	Enhancers	Right Atrium	heart
41	chr10:99088400-99093400	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
42	chr10:99088600-99091600	Weak transcription	NHLF	lung
43	chr10:99088800-99090800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr10:99088800-99091200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:99088800-99091200	Genic enhancers	Adipose Nuclei	Adipose
46	chr10:99089000-99091200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:99089000-99091400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr10:99089000-99091600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr10:99089000-99091800	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr10:99089000-99092400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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