Variant report

Variant	rs4921689
Chromosome Location	chr8:19978635-19978636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10503671	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11784775	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13278884	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4921690	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4922128	0.92[ASN][1000 genomes]
rs4922129	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4922130	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7001825	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv890633	chr8:19875100-19985382	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1033931	chr8:19954428-19979303	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1015598	chr8:19963102-20088510	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv539523	chr8:19963102-20088510	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv8311	chr8:19975043-19980924	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv890634	chr8:19976239-20028474	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19974200-19979200	Enhancers	Placenta	Placenta
2	chr8:19975800-19980000	Weak transcription	NHEK	skin
3	chr8:19977600-19979400	Weak transcription	HMEC	breast
4	chr8:19977600-19980000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:19978000-19979400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:19978000-19979600	Weak transcription	HUVEC	blood vessel
7	chr8:19978000-19981000	Weak transcription	Fetal Lung	lung
8	chr8:19978000-19981000	Weak transcription	Fetal Muscle Leg	muscle
9	chr8:19978000-19993600	Weak transcription	Right Ventricle	heart
10	chr8:19978200-19979600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:19978200-19980800	Weak transcription	Adipose Nuclei	Adipose
12	chr8:19978200-19981000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr8:19978200-19981000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr8:19978200-19987000	Weak transcription	Left Ventricle	heart
15	chr8:19978400-19979400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr8:19978400-19979600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:19978400-19980000	Weak transcription	Hela-S3	cervix
18	chr8:19978400-19980400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr8:19978400-19980600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:19978400-19981000	Weak transcription	A549	lung
21	chr8:19978400-19981200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr8:19978400-19983000	Weak transcription	Right Atrium	heart
23	chr8:19978600-19979000	Weak transcription	NH-A	brain
24	chr8:19978600-19982000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links