Variant report

Variant	rs4924287
Chromosome Location	chr15:38972177-38972178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12917221	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1874252	0.88[CHD][hapmap]
rs35958438	0.83[ASN][1000 genomes]
rs6495988	0.82[EUR][1000 genomes]
rs7165355	0.85[EUR][1000 genomes]
rs7174485	1.00[CEU][hapmap];0.89[GIH][hapmap];0.90[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949171	chr15:38232548-39033746	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv904085	chr15:38786114-38985513	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv525770	chr15:38816833-39084956	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1054651	chr15:38827825-39082844	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv542358	chr15:38827825-39082844	Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4924287	BMF	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:38966200-38975000	Weak transcription	Fetal Thymus	thymus
2	chr15:38967000-38974000	Weak transcription	Primary T cells from cord blood	blood
3	chr15:38967000-38974800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr15:38967200-38974800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr15:38967400-38973200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr15:38967400-38974400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr15:38967400-38974800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr15:38967600-38973000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:38967600-38973600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr15:38967800-38974000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr15:38967800-38974400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr15:38968200-38974000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:38968600-38973800	Weak transcription	Primary B cells from cord blood	blood
14	chr15:38970400-38974600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr15:38970800-38975200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:38971600-38975000	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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