Variant report

Variant	rs4930162
Chromosome Location	chr11:65587755-65587756
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65478558..65482535-chr11:65584117..65589770,6	MCF-7	breast:
2	chr11:65537232..65538956-chr11:65585286..65587865,2	MCF-7	breast:
3	chr11:65545110..65546921-chr11:65587302..65589568,2	MCF-7	breast:
4	chr11:65478477..65481649-chr11:65584487..65588308,4	K562	blood:
5	chr11:65581388..65588369-chr11:65620968..65629930,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172757	Chromatin interaction
ENSG00000172977	Chromatin interaction
ENSG00000172732	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10791825	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10791826	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10896049	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896053	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896055	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1151515	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1204771	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1204772	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420336	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4930322	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4930325	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs521004	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs550976	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56169730	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58836187	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs601887	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60678003	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895685	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs621348	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs646675	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591191	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112754	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7113768	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114237	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72924752	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9971612	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
2	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
3	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
7	nsv555215	chr11:65581579-65676516	Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65585800-65587800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr11:65585800-65588000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:65585800-65588000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:65585800-65588400	Weak transcription	Liver	Liver
5	chr11:65585800-65588600	Weak transcription	Gastric	stomach
6	chr11:65585800-65600200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:65585800-65600600	Weak transcription	Small Intestine	intestine
8	chr11:65586000-65588600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:65586000-65591200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:65586200-65587800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:65586200-65587800	Weak transcription	Primary B cells from cord blood	blood
12	chr11:65586200-65588400	Weak transcription	Colonic Mucosa	Colon
13	chr11:65586200-65588600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:65586200-65588600	Weak transcription	Fetal Kidney	kidney
15	chr11:65586200-65588600	Weak transcription	Pancreas	Pancrea
16	chr11:65586200-65588600	Weak transcription	Stomach Mucosa	stomach
17	chr11:65586200-65588600	Weak transcription	Spleen	Spleen
18	chr11:65586200-65590200	Enhancers	Fetal Intestine Large	intestine
19	chr11:65586200-65594400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:65586400-65588000	Weak transcription	HepG2	liver
21	chr11:65587200-65588000	Enhancers	Duodenum Mucosa	Duodenum
22	chr11:65587200-65588200	Enhancers	Primary hematopoietic stem cells	blood
23	chr11:65587200-65588800	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr11:65587200-65588800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr11:65587200-65590000	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr11:65587400-65589200	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr11:65587400-65590000	Enhancers	Fetal Intestine Small	intestine
28	chr11:65587600-65588400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr11:65587600-65588400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:65587600-65590000	Enhancers	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links