Variant report

Variant	rs4930852
Chromosome Location	chr12:29249771-29249772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10734770	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10743643	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1390542	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1496221	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1865764	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2164493	0.93[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2196479	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3940535	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4930849	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4930850	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4931154	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6487757	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6487764	0.94[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs716704	0.91[ASN][1000 genomes]
rs7304088	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7315912	0.91[ASN][1000 genomes]
rs7316030	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs73254758	0.85[ASN][1000 genomes]
rs7964313	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7966290	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532233	chr12:29009388-29496179	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2758301	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759888	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29246400-29251800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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