Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10506068	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10734789	0.86[ASN][1000 genomes]
rs10743721	0.97[ASN][1000 genomes]
rs10771723	0.86[ASN][1000 genomes]
rs11050927	0.83[ASN][1000 genomes]
rs12582764	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1500108	0.83[ASN][1000 genomes]
rs1506372	0.86[ASN][1000 genomes]
rs1506392	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16906414	0.85[EUR][1000 genomes]
rs16906436	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1876183	0.86[ASN][1000 genomes]
rs2133690	0.98[ASN][1000 genomes]
rs4931341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60625006	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61641938	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs61921064	0.84[EUR][1000 genomes]
rs6487912	0.84[EUR][1000 genomes]
rs74082416	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7960523	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7961829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9971884	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1045252	chr12:30583170-30621743	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1050233	chr12:30590071-30670919	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30618800-30620200	Enhancers	Fetal Brain Male	brain
2	chr12:30618800-30620200	Enhancers	Fetal Brain Female	brain

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