Variant report

Variant	rs4936515
Chromosome Location	chr11:120208185-120208186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:120202465..120204611-chr11:120208153..120210823,2	K562	blood:
2	chr11:120205769..120208609-chr11:120306177..120309218,3	MCF-7	breast:
3	chr11:120207958..120210253-chr11:120247180..120249390,2	K562	blood:
4	chr11:120208182..120211778-chr11:120301083..120304985,6	K562	blood:
5	chr11:120112775..120115205-chr11:120208059..120211030,2	K562	blood:
6	chr11:120187467..120189508-chr11:120207099..120208640,2	MCF-7	breast:
7	chr11:120207370..120208927-chr11:120276135..120278811,2	K562	blood:
8	chr11:120105780..120109103-chr11:120204882..120208710,5	K562	blood:
9	chr11:120105780..120109103-chr11:120204882..120208710,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000196914	Chromatin interaction
ENSG00000137709	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12786734	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34172482	0.86[AMR][1000 genomes]
rs35734851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	esv3360321	chr11:120205767-120208715	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120205600-120208200	Active TSS	Stomach Smooth Muscle	stomach
2	chr11:120205600-120208600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:120205600-120208800	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr11:120205600-120209000	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr11:120205600-120209000	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr11:120205600-120209400	Active TSS	Brain Hippocampus Middle	brain
7	chr11:120205600-120209400	Active TSS	Fetal Intestine Large	intestine
8	chr11:120205600-120209600	Active TSS	Fetal Muscle Trunk	muscle
9	chr11:120205600-120210000	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr11:120205600-120210000	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr11:120205600-120210000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:120205600-120210000	Active TSS	Colon Smooth Muscle	Colon
13	chr11:120205600-120210000	Active TSS	Hela-S3	cervix
14	chr11:120205600-120210200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:120205600-120210200	Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr11:120205600-120210200	Active TSS	A549	lung
17	chr11:120205600-120210600	Active TSS	Brain Cingulate Gyrus	brain
18	chr11:120205600-120210800	Active TSS	Colonic Mucosa	Colon
19	chr11:120205600-120211600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:120205800-120208600	Active TSS	Fetal Intestine Small	intestine
21	chr11:120205800-120208800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:120205800-120208800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:120205800-120209000	Active TSS	Pancreas	Pancrea
24	chr11:120205800-120209000	Active TSS	Stomach Mucosa	stomach
25	chr11:120205800-120209400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr11:120205800-120209600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:120205800-120210200	Active TSS	Psoas Muscle	Psoas
28	chr11:120205800-120210200	Active TSS	NHDF-Ad	bronchial
29	chr11:120205800-120210400	Active TSS	Ovary	ovary
30	chr11:120205800-120210800	Active TSS	Aorta	Aorta
31	chr11:120205800-120210800	Active TSS	Brain Angular Gyrus	brain
32	chr11:120205800-120211000	Active TSS	Left Ventricle	heart
33	chr11:120205800-120211200	Active TSS	Right Atrium	heart
34	chr11:120205800-120211600	Active TSS	Right Ventricle	heart
35	chr11:120206000-120209000	Active TSS	H9 Cell Line	embryonic stem cell
36	chr11:120206000-120209600	Active TSS	Placenta	Placenta
37	chr11:120206200-120208200	Active TSS	Placenta Amnion	Placenta Amnion
38	chr11:120206200-120208400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:120206200-120208600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr11:120206200-120208600	Active TSS	HUES48 Cell Line	embryonic stem cell
41	chr11:120206200-120208800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr11:120206200-120208800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:120206200-120209000	Active TSS	Fetal Heart	heart
44	chr11:120206200-120209400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:120206200-120209400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr11:120206200-120209400	Active TSS	iPS-15b Cell Line	embryonic stem cell
47	chr11:120206200-120209400	Active TSS	Fetal Kidney	kidney
48	chr11:120206200-120209400	Active TSS	Rectal Mucosa Donor 29	rectum
49	chr11:120206200-120209600	Active TSS	H1 Cell Line	embryonic stem cell
50	chr11:120206200-120210000	Active TSS	Muscle Satellite Cultured Cells	--

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