Variant report

Variant	rs493813
Chromosome Location	chr11:92820634-92820635
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12287402	1.00[AMR][1000 genomes]
rs12287509	1.00[AMR][1000 genomes]
rs12289236	1.00[AMR][1000 genomes]
rs192414	1.00[AMR][1000 genomes]
rs492987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555903	chr11:92640787-92877533	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv555904	chr11:92640787-92881933	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv526546	chr11:92742186-92851178	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92817000-92821200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:92817200-92827800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr11:92817800-92823000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:92818800-92821200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:92818800-92824000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:92819000-92822400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:92819000-92822400	Weak transcription	NHDF-Ad	bronchial
8	chr11:92819000-92822600	Weak transcription	Osteobl	bone
9	chr11:92819800-92820800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:92820000-92821000	Weak transcription	Ovary	ovary
11	chr11:92820000-92822600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:92820200-92822000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:92820200-92822400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:92820400-92820800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:92820400-92821200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:92820400-92821200	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr11:92820400-92822400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:92820600-92822000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr11:92820600-92822400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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