Variant report

Variant	rs4938738
Chromosome Location	chr11:119778544-119778545
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119776418..119778910-chr11:119779204..119783369,3	MCF-7	breast:
2	chr11:119763412..119765183-chr11:119776364..119779168,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11217560	0.98[EUR][1000 genomes]
rs11217562	0.98[EUR][1000 genomes]
rs12285075	0.94[EUR][1000 genomes]
rs12286892	0.98[EUR][1000 genomes]
rs2044545	0.96[EUR][1000 genomes]
rs2441940	0.83[ASN][1000 genomes]
rs487827	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4938736	0.93[EUR][1000 genomes]
rs4938737	0.96[EUR][1000 genomes]
rs508479	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs517918	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs518932	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs525588	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs542467	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs553578	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs554422	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs559430	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs563372	0.96[ASN][1000 genomes]
rs582343	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs583687	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs596770	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs641896	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs662733	0.96[ASN][1000 genomes]
rs765814	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038232	chr11:119759344-119785065	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1044698	chr11:119767614-119789683	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1051760	chr11:119770181-119789683	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1048084	chr11:119771748-119808864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv275318	chr11:119775811-119785360	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119763000-119780800	Weak transcription	Right Atrium	heart
2	chr11:119772600-119779800	Enhancers	Liver	Liver
3	chr11:119774400-119778800	Weak transcription	Brain Substantia Nigra	brain
4	chr11:119775200-119780200	Enhancers	Placenta	Placenta
5	chr11:119775400-119780400	Weak transcription	Gastric	stomach
6	chr11:119775800-119781400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:119776200-119779200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:119776600-119778800	Active TSS	Colonic Mucosa	Colon
9	chr11:119776800-119780000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:119777000-119779000	Flanking Active TSS	Duodenum Mucosa	Duodenum
11	chr11:119777000-119779000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
12	chr11:119777000-119779600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:119777000-119779800	Enhancers	Fetal Lung	lung
14	chr11:119777000-119780000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr11:119777200-119780000	Enhancers	Fetal Brain Male	brain
16	chr11:119777200-119782600	Enhancers	Fetal Heart	heart
17	chr11:119777400-119779400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr11:119777600-119779800	Enhancers	Esophagus	oesophagus
19	chr11:119777600-119783000	Enhancers	Brain Angular Gyrus	brain
20	chr11:119777800-119778600	Bivalent Enhancer	HepG2	liver
21	chr11:119777800-119779000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr11:119777800-119779400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr11:119777800-119779400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:119777800-119779600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr11:119777800-119779600	Bivalent Enhancer	Fetal Muscle Leg	muscle
26	chr11:119777800-119781800	Enhancers	Brain Germinal Matrix	brain
27	chr11:119778000-119778600	Flanking Active TSS	Stomach Mucosa	stomach
28	chr11:119778000-119778800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:119778000-119778800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
30	chr11:119778000-119779000	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr11:119778000-119779200	Enhancers	Lung	lung
32	chr11:119778000-119779400	Enhancers	H1 Cell Line	embryonic stem cell
33	chr11:119778000-119779400	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr11:119778000-119779600	Bivalent Enhancer	Fetal Stomach	stomach
35	chr11:119778000-119779800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:119778000-119780000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:119778000-119780400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr11:119778200-119778600	Flanking Active TSS	Fetal Intestine Large	intestine
39	chr11:119778200-119778800	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr11:119778200-119779600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr11:119778200-119783200	Enhancers	Brain Cingulate Gyrus	brain
42	chr11:119778400-119778600	Enhancers	Fetal Intestine Small	intestine
43	chr11:119778400-119779000	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr11:119778400-119780200	Enhancers	Fetal Brain Female	brain
45	chr11:119778400-119780800	Weak transcription	Pancreas	Pancrea
46	chr11:119778400-119780800	Weak transcription	Right Ventricle	heart
47	chr11:119778400-119781000	Weak transcription	Spleen	Spleen
48	chr11:119778400-119781600	Enhancers	Brain Anterior Caudate	brain
49	chr11:119778400-119783000	Enhancers	Brain Hippocampus Middle	brain
50	chr11:119778400-119783000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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