Variant report

Variant	rs4938914
Chromosome Location	chr11:59022668-59022669
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10896953	0.83[YRI][hapmap]
rs11229900	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2275991	0.91[ASN][1000 genomes]
rs491558	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4939267	0.82[YRI][hapmap]
rs6591511	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591517	0.83[YRI][hapmap]
rs6591518	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7119212	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7928225	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	esv1821250	chr11:58925860-59059179	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv3351601	chr11:58979308-59052763	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3381199	chr11:59015574-59068938	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59015600-59025000	Weak transcription	Lung	lung
2	chr11:59016600-59022800	Weak transcription	Placenta	Placenta
3	chr11:59020600-59023200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr11:59020600-59023400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:59021200-59022800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr11:59021400-59023000	Enhancers	Primary B cells from cord blood	blood
7	chr11:59021400-59023000	Enhancers	Primary B cells from peripheral blood	blood
8	chr11:59022400-59023000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:59022400-59023200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr11:59022400-59023200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:59022400-59023200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr11:59022600-59023200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr11:59022600-59024200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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