Variant report

Variant	rs4942963
Chromosome Location	chr13:51725237-51725238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4245354	0.84[CEU][hapmap]
rs4942965	0.84[CEU][hapmap];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv900079	chr13:51711436-51739168	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv900080	chr13:51711436-51754873	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51720600-51731600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr13:51721600-51728600	Weak transcription	Spleen	Spleen
3	chr13:51723000-51727000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:51723200-51725400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr13:51723200-51725400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr13:51723200-51725800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr13:51723200-51726800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr13:51723200-51727000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr13:51723200-51727800	Weak transcription	HUVEC	blood vessel
10	chr13:51723200-51732600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:51724000-51725800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr13:51724000-51727000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr13:51724000-51727200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr13:51724000-51732600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr13:51724600-51727000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr13:51724600-51730400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr13:51724800-51725400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr13:51725000-51726800	Enhancers	Liver	Liver
19	chr13:51725200-51727000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr13:51725200-51728200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr13:51725200-51728200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr13:51725200-51728600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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