Variant report

Variant	rs4942974
Chromosome Location	chr13:51794555-51794556
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9535627	1.00[CHD][hapmap]
rs9596486	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51786400-51795600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:51787800-51795400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:51790800-51795400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:51790800-51795600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:51792800-51795800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr13:51793200-51795200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr13:51793800-51795400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
8	chr13:51794400-51794800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr13:51794400-51795200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
10	chr13:51794400-51795600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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