Variant report

Variant	rs4943543
Chromosome Location	chr13:38474387-38474388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11839420	0.85[AMR][1000 genomes]
rs1415605	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2068891	0.90[AMR][1000 genomes]
rs4943549	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4943553	0.90[AMR][1000 genomes]
rs7996872	0.92[AMR][1000 genomes]
rs863660	0.81[JPT][hapmap]
rs9532133	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9548105	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9548106	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9548113	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv899996	chr13:38459224-38577056	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38473600-38474400	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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