Variant report

Variant	rs4944661
Chromosome Location	chr11:86738825-86738826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1031584	0.96[CEU][hapmap];0.91[CHB][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1531145	0.80[ASN][1000 genomes]
rs1545600	0.86[CEU][hapmap];0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs2445534	0.80[ASN][1000 genomes]
rs2445536	0.91[CEU][hapmap];0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs2445572	0.80[ASN][1000 genomes]
rs2512360	0.80[ASN][1000 genomes]
rs2512362	0.80[ASN][1000 genomes]
rs2512374	0.84[ASN][1000 genomes]
rs2512375	0.84[ASN][1000 genomes]
rs2512376	0.84[ASN][1000 genomes]
rs2512377	0.95[CEU][hapmap];0.91[CHB][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2512398	0.80[ASN][1000 genomes]
rs2512503	0.96[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2513235	0.86[CEU][hapmap];0.91[CHB][hapmap]
rs2513237	0.86[CEU][hapmap];0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs2513238	0.91[CEU][hapmap];0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs3100849	0.80[ASN][1000 genomes]
rs3133315	0.84[ASN][1000 genomes]
rs4514445	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs717722	0.80[ASN][1000 genomes]
rs717723	0.92[CEU][hapmap];0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs921872	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv975960	chr11:86735786-86740095	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86731800-86748200	Weak transcription	Fetal Muscle Leg	muscle
2	chr11:86732400-86739400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:86734400-86739600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:86735800-86748200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:86738800-86741400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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