Variant report

Variant	rs4944877
Chromosome Location	chr11:73753671-73753672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12417424	0.98[ASN][1000 genomes]
rs17310472	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72984825	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4944877	UCP2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73722200-73767200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:73728000-73755000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
4	chr11:73734600-73754400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:73737000-73760400	Weak transcription	Psoas Muscle	Psoas
6	chr11:73738600-73754600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:73738600-73754600	Strong transcription	Dnd41	blood
8	chr11:73738600-73754800	Strong transcription	Stomach Smooth Muscle	stomach
9	chr11:73739600-73753800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:73740000-73771000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:73742600-73758000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:73742800-73754600	Strong transcription	Primary B cells from peripheral blood	blood
13	chr11:73743000-73755200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:73743400-73754400	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:73745000-73758200	Weak transcription	NHDF-Ad	bronchial
16	chr11:73745400-73758200	Weak transcription	Esophagus	oesophagus
17	chr11:73745400-73764800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:73746000-73768000	Weak transcription	NHEK	skin
19	chr11:73746400-73766000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:73747000-73767000	Weak transcription	HepG2	liver
21	chr11:73748400-73753800	Strong transcription	Fetal Stomach	stomach
22	chr11:73750400-73759600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr11:73750600-73758800	Weak transcription	HUVEC	blood vessel
24	chr11:73750800-73756400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr11:73750800-73783600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr11:73750800-73800400	Weak transcription	HMEC	breast
27	chr11:73751000-73780200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr11:73751800-73754600	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:73752000-73758600	Weak transcription	Fetal Intestine Small	intestine
30	chr11:73752200-73753800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:73752200-73754400	Strong transcription	Duodenum Mucosa	Duodenum
32	chr11:73752200-73754400	Strong transcription	A549	lung
33	chr11:73752200-73754600	Strong transcription	Primary B cells from cord blood	blood
34	chr11:73752200-73754800	Strong transcription	HSMM	muscle
35	chr11:73752400-73753800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:73752400-73754600	Strong transcription	Primary T cells from cord blood	blood
37	chr11:73752800-73758800	Weak transcription	Fetal Lung	lung
38	chr11:73753000-73755800	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr11:73753000-73756400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr11:73753000-73757400	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr11:73753000-73758000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:73753000-73758600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr11:73753000-73770400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr11:73753000-73781400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr11:73753200-73754400	Weak transcription	Primary hematopoietic stem cells	blood
46	chr11:73753200-73755600	Weak transcription	Fetal Muscle Leg	muscle
47	chr11:73753200-73756800	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr11:73753200-73757000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:73753200-73757000	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr11:73753200-73757200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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