Variant report

Variant	rs4945156
Chromosome Location	chr11:76892179-76892180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:76892038-76892250	HepG2	liver:	n/a	chr11:76892110-76892121
2	CEBPB	chr11:76892058-76892227	A549	lung:	n/a	chr11:76892110-76892121

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76888342..76890905-chr11:76892129..76894911,2	MCF-7	breast:

Variant related genes	Relation type
MYO7A	TF binding region
ENSG00000137474	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12805353	0.89[JPT][hapmap]
rs12805873	0.89[JPT][hapmap]
rs2076969	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs6592711	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76880400-76916600	Weak transcription	Right Atrium	heart
2	chr11:76883800-76898400	Weak transcription	Colonic Mucosa	Colon
3	chr11:76885200-76896000	Strong transcription	Fetal Intestine Large	intestine
4	chr11:76885400-76896000	Strong transcription	Fetal Intestine Small	intestine
5	chr11:76886000-76894600	Weak transcription	Brain Substantia Nigra	brain
6	chr11:76887000-76895000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:76887600-76902600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:76887800-76894000	Weak transcription	Brain Anterior Caudate	brain
9	chr11:76887800-76899600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:76887800-76902800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:76888200-76893400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr11:76888200-76894000	Strong transcription	Spleen	Spleen
13	chr11:76888600-76896000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:76889200-76894600	Strong transcription	Pancreas	Pancrea
15	chr11:76890000-76892400	Enhancers	Fetal Muscle Trunk	muscle
16	chr11:76890200-76892200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr11:76890600-76893400	Weak transcription	Right Ventricle	heart
18	chr11:76890800-76892400	Weak transcription	Gastric	stomach
19	chr11:76890800-76893000	Strong transcription	Fetal Stomach	stomach
20	chr11:76890800-76918400	Weak transcription	Ovary	ovary
21	chr11:76891000-76894200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr11:76891200-76902800	Weak transcription	Adipose Nuclei	Adipose
23	chr11:76891400-76894800	Strong transcription	Placenta	Placenta
24	chr11:76891400-76899200	Strong transcription	Liver	Liver
25	chr11:76891600-76893000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:76891800-76894200	Weak transcription	Fetal Muscle Leg	muscle

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