Variant report
| Variant | rs494543 |
|---|---|
| Chromosome Location | chr7:103387642-103387643 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs13311242 | 0.82[EUR][1000 genomes] |
| rs34987839 | 0.84[AMR][1000 genomes] |
| rs476736 | 0.87[AMR][1000 genomes] |
| rs491170 | 0.87[AMR][1000 genomes] |
| rs491921 | 0.87[AMR][1000 genomes] |
| rs494623 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs496801 | 0.87[AMR][1000 genomes] |
| rs499238 | 0.87[AMR][1000 genomes] |
| rs499998 | 0.85[AMR][1000 genomes] |
| rs503791 | 0.87[AMR][1000 genomes] |
| rs505389 | 0.87[AMR][1000 genomes] |
| rs521185 | 0.87[AMR][1000 genomes] |
| rs524949 | 0.84[AMR][1000 genomes] |
| rs526762 | 0.84[AMR][1000 genomes] |
| rs531010 | 0.87[AMR][1000 genomes] |
| rs549743 | 0.87[AMR][1000 genomes] |
| rs575867 | 0.87[AMR][1000 genomes] |
| rs584940 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs586211 | 0.82[AMR][1000 genomes] |
| rs588423 | 0.87[AMR][1000 genomes] |
| rs588435 | 0.87[AMR][1000 genomes] |
| rs619926 | 0.87[AMR][1000 genomes] |
| rs636187 | 0.87[AMR][1000 genomes] |
| rs638355 | 0.87[AMR][1000 genomes] |
| rs651488 | 0.87[AMR][1000 genomes] |
| rs665251 | 0.87[AMR][1000 genomes] |
| rs667554 | 0.87[AMR][1000 genomes] |
| rs681007 | 0.87[AMR][1000 genomes] |
| rs681008 | 0.87[AMR][1000 genomes] |
| rs682018 | 0.87[AMR][1000 genomes] |
| rs683360 | 0.87[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv491911 | chr7:102967150-103403622 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv427799 | chr7:103250733-103454202 | Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:103375200-103391000 | Weak transcription | HepG2 | liver |
