Variant report

Variant	rs4945637
Chromosome Location	chr6:119747945-119747946
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119730170..119732878-chr6:119745962..119749242,4	K562	blood:
2	chr6:119746548..119748341-chr6:119750350..119752791,2	MCF-7	breast:
3	chr6:119745246..119748327-chr6:119749609..119753522,3	K562	blood:
4	chr6:119730819..119732878-chr6:119745962..119748059,2	K562	blood:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1112369	0.84[ASN][1000 genomes]
rs11153828	0.82[ASN][1000 genomes]
rs12660903	0.80[ASN][1000 genomes]
rs12661049	0.80[ASN][1000 genomes]
rs12665378	0.81[ASN][1000 genomes]
rs1288080	0.86[ASN][1000 genomes]
rs1288081	0.86[ASN][1000 genomes]
rs1318271	0.84[ASN][1000 genomes]
rs1341490	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs1353864	0.84[ASN][1000 genomes]
rs1392090	0.84[ASN][1000 genomes]
rs1499569	0.84[ASN][1000 genomes]
rs1553171	0.82[ASN][1000 genomes]
rs17081283	0.84[ASN][1000 genomes]
rs17081375	0.80[ASN][1000 genomes]
rs17081423	0.89[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs1813894	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1875056	0.86[ASN][1000 genomes]
rs1963055	0.84[ASN][1000 genomes]
rs2036256	0.80[ASN][1000 genomes]
rs2066353	0.84[ASN][1000 genomes]
rs2153823	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs2185752	0.84[ASN][1000 genomes]
rs2185754	0.82[ASN][1000 genomes]
rs3891962	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4142250	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4142806	0.89[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs4551205	0.80[ASN][1000 genomes]
rs4613849	0.80[ASN][1000 genomes]
rs4945640	0.84[ASN][1000 genomes]
rs4945642	0.81[ASN][1000 genomes]
rs4946417	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4946419	0.80[ASN][1000 genomes]
rs4946420	0.84[ASN][1000 genomes]
rs4946423	0.82[ASN][1000 genomes]
rs4946424	0.80[ASN][1000 genomes]
rs4946426	0.80[ASN][1000 genomes]
rs4946427	0.88[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs55901595	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56081039	0.80[ASN][1000 genomes]
rs56091753	0.82[ASN][1000 genomes]
rs56346325	0.80[ASN][1000 genomes]
rs6913097	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs6918211	0.84[ASN][1000 genomes]
rs6923080	0.84[ASN][1000 genomes]
rs6935310	0.84[ASN][1000 genomes]
rs6940248	0.80[ASN][1000 genomes]
rs742962	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7452780	0.80[ASN][1000 genomes]
rs7745025	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs7757317	0.91[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7768102	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320694	0.89[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs9385073	0.84[ASN][1000 genomes]
rs9387652	0.84[ASN][1000 genomes]
rs9481911	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9481922	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9481923	0.85[AMR][1000 genomes]
rs9481924	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9481927	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9481929	0.87[ASN][1000 genomes]
rs9481930	0.86[ASN][1000 genomes]
rs9481931	0.86[ASN][1000 genomes]
rs9481933	0.84[ASN][1000 genomes]
rs9481936	0.89[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs9489698	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9489709	0.99[ASN][1000 genomes]
rs9489710	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9489714	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9489715	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9489716	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9489717	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9489718	0.87[ASN][1000 genomes]
rs9489719	0.86[ASN][1000 genomes]
rs9489720	0.84[ASN][1000 genomes]
rs9489723	0.82[ASN][1000 genomes]
rs9489724	0.82[ASN][1000 genomes]
rs9489725	0.80[ASN][1000 genomes]
rs9489727	0.80[ASN][1000 genomes]
rs9489728	0.80[ASN][1000 genomes]
rs9489729	0.80[ASN][1000 genomes]
rs9489731	0.80[ASN][1000 genomes]
rs9489733	0.89[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs9885803	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2754142	chr6:119717806-119748647	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	esv1845804	chr6:119747112-119771715	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119747200-119748400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:119747400-119748400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:119747600-119748200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:119747800-119748000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:119747800-119748000	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr6:119747800-119748000	Enhancers	Aorta	Aorta
7	chr6:119747800-119748200	Enhancers	Colon Smooth Muscle	Colon
8	chr6:119747800-119748200	Enhancers	Pancreas	Pancrea
9	chr6:119747800-119748200	Enhancers	HSMMtube	muscle
10	chr6:119747800-119748400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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