Variant report

Variant	rs4946735
Chromosome Location	chr6:106787583-106787584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:106786925..106787823-chr6:107013824..107015072,4	K562	blood:
2	chr6:106786568..106787852-chr6:106808000..106808986,4	MCF-7	breast:
3	chr6:106786963..106787925-chr6:107318573..107319426,3	K562	blood:
4	chr6:106786932..106787612-chr6:106892577..106893519,3	MCF-7	breast:
5	chr6:106783098..106785023-chr6:106786459..106788185,2	K562	blood:
6	chr6:106787006..106787885-chr6:107013976..107015041,5	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10484576	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs10485352	0.92[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10499049	1.00[AFR][1000 genomes]
rs12524358	1.00[AFR][1000 genomes]
rs12525660	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526431	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs12526668	0.93[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12529488	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs1415945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17066826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17066828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17066837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17066840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17066847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17066852	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17066855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587319	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs17625939	1.00[AFR][1000 genomes]
rs2299860	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs28656919	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3761796	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3804332	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs3804338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3810872	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4028632	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4945745	1.00[AFR][1000 genomes]
rs4945748	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4946736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946738	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946741	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55682462	1.00[AFR][1000 genomes]
rs56204731	1.00[AFR][1000 genomes]
rs62422916	0.82[ASN][1000 genomes]
rs9373856	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1025900	chr6:106529777-106898421	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1018270	chr6:106531658-106908606	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv538399	chr6:106531658-106908606	Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1035110	chr6:106557281-106802212	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv538400	chr6:106557281-106802212	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv1022855	chr6:106570926-106802072	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv538401	chr6:106570926-106802072	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
10	nsv1025963	chr6:106593639-106848778	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
11	nsv1020047	chr6:106597828-106912047	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
12	nsv970664	chr6:106635267-106887670	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
13	nsv1030367	chr6:106667748-106802072	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
14	nsv538403	chr6:106667748-106802072	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
15	nsv870375	chr6:106696090-107047892	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106787000-106787600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:106787000-106787600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:106787000-106787600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:106787000-106787800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:106787000-106788600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:106787200-106787600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
7	chr6:106787200-106787600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:106787200-106787600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:106787200-106787600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr6:106787200-106787600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:106787200-106787600	Flanking Active TSS	Brain Anterior Caudate	brain
12	chr6:106787200-106787800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr6:106787200-106787800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:106787200-106787800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:106787200-106787800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:106787200-106787800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:106787200-106787800	Enhancers	NH-A	brain
18	chr6:106787200-106788000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:106787200-106789000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:106787400-106787600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:106787400-106787600	Active TSS	Brain Cingulate Gyrus	brain
22	chr6:106787400-106787600	Active TSS	Brain Hippocampus Middle	brain
23	chr6:106787400-106787600	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr6:106787400-106787600	Bivalent Enhancer	Stomach Mucosa	stomach
25	chr6:106787400-106787600	Flanking Active TSS	Hela-S3	cervix
26	chr6:106787400-106787600	Flanking Active TSS	K562	blood
27	chr6:106787400-106787800	Flanking Active TSS	Adipose Nuclei	Adipose
28	chr6:106787400-106787800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
29	chr6:106787400-106787800	Active TSS	Colonic Mucosa	Colon
30	chr6:106787400-106787800	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr6:106787400-106787800	Flanking Active TSS	Fetal Intestine Large	intestine
32	chr6:106787400-106787800	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr6:106787400-106787800	Flanking Active TSS	A549	lung
34	chr6:106787400-106787800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr6:106787400-106787800	Flanking Active TSS	NHEK	skin
36	chr6:106787400-106788000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:106787400-106788000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:106787400-106788000	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr6:106787400-106788200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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