Variant report
| Variant | rs494935 |
|---|---|
| Chromosome Location | chr15:34256420-34256421 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:167)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CHRM5 | TF binding region |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs12902206 | 0.80[AMR][1000 genomes] |
| rs2632086 | 0.86[CHB][hapmap] |
| rs2632095 | 0.86[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs2702310 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34961127 | 0.81[ASN][1000 genomes] |
| rs476121 | 0.86[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs480616 | 0.86[CHB][hapmap] |
| rs493857 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs499366 | 0.81[ASN][1000 genomes] |
| rs499457 | 0.81[ASN][1000 genomes] |
| rs501012 | 0.86[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs501432 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs504714 | 0.86[CHB][hapmap] |
| rs505720 | 0.86[CHB][hapmap] |
| rs516625 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs529672 | 0.86[CHB][hapmap] |
| rs530700 | 0.86[CHB][hapmap] |
| rs535732 | 0.86[CHB][hapmap] |
| rs553655 | 0.86[CHB][hapmap] |
| rs554293 | 0.86[CHB][hapmap] |
| rs554417 | 0.86[CHB][hapmap] |
| rs557225 | 0.86[CHB][hapmap] |
| rs558160 | 0.86[CHB][hapmap] |
| rs558923 | 0.86[CHB][hapmap] |
| rs603479 | 0.86[CHB][hapmap] |
| rs606126 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs609097 | 0.83[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs636165 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs637055 | 0.85[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs638021 | 0.86[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs638169 | 0.85[CHB][hapmap] |
| rs652699 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs661968 | 0.86[CHB][hapmap] |
| rs663273 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs676281 | 0.86[CHB][hapmap] |
| rs676316 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs683470 | 0.86[CHB][hapmap] |
| rs683915 | 0.86[CHB][hapmap] |
| rs684819 | 0.83[AMR][1000 genomes] |
| rs685846 | 0.80[AMR][1000 genomes] |
| rs686966 | 0.86[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1043046 | chr15:33714908-34321330 | Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv456789 | chr15:34034421-34426618 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 3 | nsv568920 | chr15:34034421-34426618 | Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 4 | nsv471235 | chr15:34035529-34421951 | Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 5 | nsv1044844 | chr15:34065524-34296829 | Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:34236800-34277200 | Weak transcription | Left Ventricle | heart |
| 2 | chr15:34238000-34282400 | Weak transcription | Ovary | ovary |
| 3 | chr15:34252600-34260400 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 4 | chr15:34256000-34256600 | Flanking Active TSS | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 5 | chr15:34256200-34257400 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
