Variant report
| Variant | rs4950097 |
|---|---|
| Chromosome Location | chr1:98659152-98659153 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10493900 | 0.83[ASN][1000 genomes] |
| rs10518654 | 0.82[ASN][1000 genomes] |
| rs10783085 | 0.86[ASN][1000 genomes] |
| rs10875130 | 0.85[ASN][1000 genomes] |
| rs10875131 | 0.83[ASN][1000 genomes] |
| rs10875132 | 0.86[ASN][1000 genomes] |
| rs11165964 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11580992 | 0.82[ASN][1000 genomes] |
| rs11802316 | 0.82[ASN][1000 genomes] |
| rs11809984 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12027634 | 0.82[ASN][1000 genomes] |
| rs12033249 | 0.85[ASN][1000 genomes] |
| rs12038627 | 0.82[ASN][1000 genomes] |
| rs12407126 | 0.82[ASN][1000 genomes] |
| rs12407367 | 0.82[ASN][1000 genomes] |
| rs12567176 | 0.85[ASN][1000 genomes] |
| rs12734525 | 0.97[ASN][1000 genomes] |
| rs17117613 | 0.82[ASN][1000 genomes] |
| rs17117616 | 0.82[ASN][1000 genomes] |
| rs17117677 | 0.82[ASN][1000 genomes] |
| rs17117881 | 0.88[ASN][1000 genomes] |
| rs1911501 | 0.82[ASN][1000 genomes] |
| rs1911502 | 0.82[ASN][1000 genomes] |
| rs2055686 | 0.82[ASN][1000 genomes] |
| rs2200583 | 0.85[ASN][1000 genomes] |
| rs355373 | 0.82[ASN][1000 genomes] |
| rs355376 | 0.82[ASN][1000 genomes] |
| rs355377 | 0.82[ASN][1000 genomes] |
| rs355379 | 0.82[ASN][1000 genomes] |
| rs4950093 | 0.82[ASN][1000 genomes] |
| rs4950094 | 0.82[ASN][1000 genomes] |
| rs4950095 | 0.82[ASN][1000 genomes] |
| rs6664310 | 0.82[ASN][1000 genomes] |
| rs7525127 | 0.82[ASN][1000 genomes] |
| rs7533634 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1012958 | chr1:98081528-98864746 | Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| 2 | nsv830736 | chr1:98488491-98663726 | Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv823631 | chr1:98554257-98687985 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1010393 | chr1:98643684-98698557 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:98647200-98669000 | Weak transcription | HUVEC | blood vessel |
