Variant report

Variant	rs4951413
Chromosome Location	chr1:210880041-210880042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11119560	0.87[AMR][1000 genomes]
rs12024118	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12040372	0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12046941	1.00[AMR][1000 genomes]
rs1890842	0.84[JPT][hapmap]
rs4366378	0.84[JPT][hapmap]
rs61679127	0.97[ASN][1000 genomes]
rs6540617	0.82[JPT][hapmap]
rs6665545	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6686046	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9430044	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873150	chr1:210808270-210893233	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210838000-210880400	Weak transcription	Gastric	stomach
2	chr1:210846400-210884600	Weak transcription	Ovary	ovary
3	chr1:210857200-210882600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:210858000-210880400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:210864400-210889800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:210866800-210884800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:210869800-210882600	Weak transcription	Brain Anterior Caudate	brain
8	chr1:210871200-210932000	Weak transcription	HSMM	muscle
9	chr1:210873800-210880600	Weak transcription	Pancreas	Pancrea
10	chr1:210874200-210887400	Weak transcription	HSMMtube	muscle
11	chr1:210876200-210881200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr1:210877200-210888400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:210878600-210883600	Weak transcription	Fetal Stomach	stomach
14	chr1:210879000-210881600	Enhancers	Liver	Liver
15	chr1:210879400-210881800	Enhancers	A549	lung
16	chr1:210879400-210882200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:210879600-210884200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr1:210880000-210882200	Enhancers	Rectal Mucosa Donor 31	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links