Variant report

Variant	rs4951460
Chromosome Location	chr1:212890780-212890781
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10494955	0.81[EUR][1000 genomes]
rs10863998	0.83[EUR][1000 genomes]
rs11120002	0.99[ASN][1000 genomes]
rs11120013	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11120026	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11120027	0.82[EUR][1000 genomes]
rs12064985	0.81[EUR][1000 genomes]
rs12088916	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12119821	0.91[ASN][1000 genomes]
rs12239975	0.90[ASN][1000 genomes]
rs12722742	0.82[EUR][1000 genomes]
rs12727790	0.99[ASN][1000 genomes]
rs4951457	0.91[ASN][1000 genomes]
rs4951636	0.99[ASN][1000 genomes]
rs4951637	0.97[ASN][1000 genomes]
rs4951638	0.83[EUR][1000 genomes]
rs6693311	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013110	chr1:212555764-212948092	Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv535287	chr1:212555764-212948092	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
3	nsv549148	chr1:212876902-212962207	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4951460	LQK1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212886400-212891800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:212886400-212894400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:212886600-212894400	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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